BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0490500 Os05g0490500|AK066923
(216 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0490500 Conserved hypothetical protein 451 e-127
Os06g0715000 Conserved hypothetical protein 137 5e-33
>Os05g0490500 Conserved hypothetical protein
Length = 216
Score = 451 bits (1159), Expect = e-127, Method: Compositional matrix adjust.
Identities = 216/216 (100%), Positives = 216/216 (100%)
Query: 1 MRQQSMIGQVAALYPVKVFHDLPHGRNLNSNTNGAHRSLSEENGTLPEENGTHLLNVIKL 60
MRQQSMIGQVAALYPVKVFHDLPHGRNLNSNTNGAHRSLSEENGTLPEENGTHLLNVIKL
Sbjct: 1 MRQQSMIGQVAALYPVKVFHDLPHGRNLNSNTNGAHRSLSEENGTLPEENGTHLLNVIKL 60
Query: 61 PQIHALTFLGWQIGKQRRKQNDICEKDLQRSAAVLGYAAHAILLIASYLHVPLRYPLHFG 120
PQIHALTFLGWQIGKQRRKQNDICEKDLQRSAAVLGYAAHAILLIASYLHVPLRYPLHFG
Sbjct: 61 PQIHALTFLGWQIGKQRRKQNDICEKDLQRSAAVLGYAAHAILLIASYLHVPLRYPLHFG 120
Query: 121 GSRSYVSDCLPSAETASIASAERTCINMTDPKLTVYPLFVECQEDDPTKASYAIYLLHKD 180
GSRSYVSDCLPSAETASIASAERTCINMTDPKLTVYPLFVECQEDDPTKASYAIYLLHKD
Sbjct: 121 GSRSYVSDCLPSAETASIASAERTCINMTDPKLTVYPLFVECQEDDPTKASYAIYLLHKD 180
Query: 181 TEQLLNYIGAESSGRRVFDNLQELIRIIQSDEYVYS 216
TEQLLNYIGAESSGRRVFDNLQELIRIIQSDEYVYS
Sbjct: 181 TEQLLNYIGAESSGRRVFDNLQELIRIIQSDEYVYS 216
>Os06g0715000 Conserved hypothetical protein
Length = 387
Score = 137 bits (345), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 127/216 (58%), Gaps = 15/216 (6%)
Query: 2 RQQSMIGQVAALYPVK-VFHDLPHGRNLNSNTNGAHRSLSEENGTLPEENGTHLLNVIKL 60
RQQ M QVA LYPV+ + P + N++ +E +NG L ++ L
Sbjct: 182 RQQYMTAQVAHLYPVRPLIERSPANKPSFLNSSILKTRDAESMAPNGSQNGQAPLAILGL 241
Query: 61 PQIHALTFLGWQIGKQRRKQNDICEK-DLQRSAAVLGYAAHAILLIASYLHVPLRYPLHF 119
Q+ LT +K +K ++Q SA LGY AHA+ LIASYL VPLRYPL
Sbjct: 242 -QLSKLTM---------KKTGYFSDKTEIQNSATALGYVAHAVSLIASYLDVPLRYPLRL 291
Query: 120 GGSRSYVSDCLPSAETASIASAERTCINMTDPKLTVYPLFVECQEDDPTKASYAIYLLHK 179
GGSRSYV D PS E++S+ASA + T + +PLF E QE T+++YAI+LL+K
Sbjct: 292 GGSRSYVLDRAPSVESSSLASAISSAPLSTTMRTMEFPLFFESQET--TRSAYAIFLLNK 349
Query: 180 DTEQLLNYIGAESSG-RRVFDNLQELIRIIQSDEYV 214
D EQLLN+IGAES G R V NL++L I+QS +Y+
Sbjct: 350 DIEQLLNHIGAESLGPRHVLANLKQLTTIVQSQQYI 385
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,438,324
Number of extensions: 308377
Number of successful extensions: 597
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 594
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 119
Effective length of database: 11,971,043
Effective search space: 1424554117
Effective search space used: 1424554117
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)