BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0711600 Os06g0711600|AK064384
(340 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0711600 mRNA splicing factor SYF2 family protein 625 e-179
Os06g0711200 Conserved hypothetical protein 103 1e-22
>Os06g0711600 mRNA splicing factor SYF2 family protein
Length = 340
Score = 625 bits (1613), Expect = e-179, Method: Compositional matrix adjust.
Identities = 306/331 (92%), Positives = 306/331 (92%)
Query: 10 GKSRPECINSSNPFHECSDYCLRKIAEAKERIEDEQRPPVDRTVHPDCINASNPYHVCSE 69
GKSRPECINSSNPFHECSDYCLRKIAEAKERIEDEQRPPVDRTVHPDCINASNPYHVCSE
Sbjct: 10 GKSRPECINSSNPFHECSDYCLRKIAEAKERIEDEQRPPVDRTVHPDCINASNPYHVCSE 69
Query: 70 YCFKRIADAKSGLERAEQEPPSADAGKXXXXXXXXXXXXXXXXXXXXXXXXXYPQMTEKQ 129
YCFKRIADAKSGLERAEQEPPSADAGK YPQMTEKQ
Sbjct: 70 YCFKRIADAKSGLERAEQEPPSADAGKSDAAQAEGGGGDDDAEQEDAGSDDGYPQMTEKQ 129
Query: 130 KKLFELRLKMNEARKANQQAMVAEKKRMEPRAESRGVSKQKWLEDRKKKIGKLLDSNGLD 189
KKLFELRLKMNEARKANQQAMVAEKKRMEPRAESRGVSKQKWLEDRKKKIGKLLDSNGLD
Sbjct: 130 KKLFELRLKMNEARKANQQAMVAEKKRMEPRAESRGVSKQKWLEDRKKKIGKLLDSNGLD 189
Query: 190 MTKSYMLDTQESAEAKYKKWEKEPAPYGWDVFNQKTLYDAYKKRTKNIEVDMEAYNKAKE 249
MTKSYMLDTQESAEAKYKKWEKEPAPYGWDVFNQKTLYDAYKKRTKNIEVDMEAYNKAKE
Sbjct: 190 MTKSYMLDTQESAEAKYKKWEKEPAPYGWDVFNQKTLYDAYKKRTKNIEVDMEAYNKAKE 249
Query: 250 ADPEFYRDASSLQYGKVSKVPEENIDRMVNELKERDEKRKAFSRRRKFHEDKDIDSINDR 309
ADPEFYRDASSLQYGKVSKVPEENIDRMVNELKERDEKRKAFSRRRKFHEDKDIDSINDR
Sbjct: 250 ADPEFYRDASSLQYGKVSKVPEENIDRMVNELKERDEKRKAFSRRRKFHEDKDIDSINDR 309
Query: 310 NEHFNKKVERAFGKYTLEIKNNLERGTALPD 340
NEHFNKKVERAFGKYTLEIKNNLERGTALPD
Sbjct: 310 NEHFNKKVERAFGKYTLEIKNNLERGTALPD 340
>Os06g0711200 Conserved hypothetical protein
Length = 171
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 80/144 (55%), Gaps = 12/144 (8%)
Query: 15 ECINSSNPFHECSDYCLRKIAEAKERIEDEQRPPVDRTVHPDCINASNPYHVCSEYCFKR 74
+C+NSSNP+HECSDYCLR+I +++ ED R VHP CINASNPYH CS +CF+R
Sbjct: 15 DCVNSSNPYHECSDYCLRQIVKSR---EDNHR---WSRVHPHCINASNPYHACSNFCFRR 68
Query: 75 IADAK---SGLERAEQEPPSADAGKXXXXXXXXXXXXXXXXXXXXXXXXX-YPQM--TEK 128
I AK SGLER QEPP+++A Y +M TE
Sbjct: 69 IIHAKPSPSGLERPVQEPPASEAVPAQADDDDDAQTDDDDEEDAAADDDDGYLKMTVTEN 128
Query: 129 QKKLFELRLKMNEARKANQQAMVA 152
QK +FELR++ + + A+ A
Sbjct: 129 QKLVFELRVRPSTILRFVVAAVCA 152
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.129 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,385,063
Number of extensions: 399101
Number of successful extensions: 1177
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1172
Number of HSP's successfully gapped: 2
Length of query: 340
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 238
Effective length of database: 11,709,973
Effective search space: 2786973574
Effective search space used: 2786973574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 156 (64.7 bits)