Os06g0711200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0711200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 304 | 0.819 | 4.82 | 2.39 | 1.11 | 1.65 | 2.15 | -3.08 | 0.265 | 7.86 | 19.9 | 617 | 3.06 | 3.15 |
| 313.19 | 0.824 | 4.82 | 2.76 | 1.1 | 1.65 | 1.73 | -- | 0.332 | 7.73 | 19.55 | 568 | 3.19 | 3.28 |
| 315.23 | 0.827 | 4.81 | 2.6 | 1 | 1.72 | -- | -1.76 | 0.294 | 7.54 | 19.51 | 610 | 3.02 | 3.28 |
| 317.08 | 0.829 | 4.78 | 2.92 | 1.05 | 1.6 | -- | -- | 0.387 | 7.45 | 18.77 | 604 | 3.12 | 3.3 |
| 324.28 | 0.839 | 4.83 | 2.98 | -- | 2.17 | -- | -0.588 | 0.478 | -- | 13.72 | 505 | 2.78 | 3.2 |
| 363.31 | 0.894 | 4.69 | 3.09 | 1.99 | -- | 1.67 | -- | 0.677 | 8.35 | -- | -- | -- | -- |
| 372.02 | 0.903 | 4.69 | 3.14 | 1.99 | -- | -- | -- | 0.676 | 8.34 | -- | -- | -- | -- |
| 319.19 | 0.832 | 4.8 | 2.88 | -- | 2.38 | -- | -- | 0.437 | -- | 13.59 | 511 | 2.58 | 3.65 |
| 529.04 | 1.07 | 4.87 | -- | 0.747 | 2.02 | -- | -- | 0.00608 | 6.75 | 18 | 628 | 2.92 | 3.1 |
| 591.41 | 1.14 | 4.74 | 3.15 | -- | -- | -- | -- | 0.698 | -- | -- | -- | -- | -- |
| 631.37 | 1.18 | 4.77 | -- | 2 | -- | -- | -- | 0.327 | 8.22 | -- | -- | -- | -- |
| 527.41 | 1.07 | 4.9 | -- | -- | 2.59 | -- | -- | 0.00463 | -- | 16.4 | 559 | 2.25 | 3.83 |
| 853 | 1.36 | 4.82 | -- | -- | -- | -- | -- | 0.348 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 310.53 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 3 |
| 3 | 311.97 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 7 |
| 31 | 317.99 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 42 | 318.93 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 2 |
| 70 | 321.59 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 21 |
| 78 | 322.03 | temperature | 25 | 10 | > th | dose dependent | sin | 7 | NA |
| 93 | 322.59 | temperature | 25 | 90 | > th | dose independent | rect. | 3 | 8 |
| 114 | 323.71 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 150 | 325.19 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 12 |
| 168 | 325.87 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 7 |
| 182 | 326.11 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 282 | 327.90 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 22 |
| 323 | 328.48 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 2 |
| 324 | 328.48 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 327 | 328.53 | temperature | 25 | 10 | < th | dose independent | rect. | 24 | 15 |
| 344 | 328.71 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 7 |
| 372 | 329.03 | temperature | 10 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 394 | 329.24 | temperature | 25 | 10 | > th | dose dependent | rect. | 19 | 18 |
| 417 | 329.52 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 15 |
| 454 | 329.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 17 |
| 478 | 330.11 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 2 |
| 540 | 330.66 | temperature | 25 | 10 | < th | dose independent | sin | 4 | NA |
| 586 | 331.04 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 597 | 331.10 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 7 |
| 624 | 331.25 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 5 |
| 666 | 331.43 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 2 |
| 670 | 331.44 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 16 |
| 693 | 331.52 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 2 |
| 717 | 331.62 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 788 | 331.90 | temperature | 20 | 4320 | < th | dose independent | rect. | 2 | 5 |
| 822 | 332.04 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 839 | 332.04 | radiation | 40 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 888 | 332.18 | temperature | 25 | 10 | < th | dose independent | rect. | 22 | 17 |
| 889 | 332.18 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 2 |
| 947 | 332.44 | temperature | 25 | 90 | > th | dose independent | rect. | 3 | 20 |
| 980 | 332.56 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 981 | 332.56 | temperature | 25 | 4320 | > th | dose dependent | sin | 4 | NA |