BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0711200 Os06g0711200|AK108753
         (171 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0711200  Conserved hypothetical protein                      261   2e-70
Os06g0711600  mRNA splicing factor SYF2 family protein            112   2e-25

>Os06g0711200 Conserved hypothetical protein
          Length = 171

 Score =  261 bits (667), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 132/157 (84%), Positives = 132/157 (84%)

Query: 15  DCVNSSNPYHECSDYCLRQIVKSREDNHRWSRVHPHCINASNPYHACSNFCFRRIIHAKP 74
           DCVNSSNPYHECSDYCLRQIVKSREDNHRWSRVHPHCINASNPYHACSNFCFRRIIHAKP
Sbjct: 15  DCVNSSNPYHECSDYCLRQIVKSREDNHRWSRVHPHCINASNPYHACSNFCFRRIIHAKP 74

Query: 75  SPSGLERPVQEPPASEAVPXXXXXXXXXXXXXXXXXXXXXXXXXGYLKMTVTENQKLVFE 134
           SPSGLERPVQEPPASEAVP                         GYLKMTVTENQKLVFE
Sbjct: 75  SPSGLERPVQEPPASEAVPAQADDDDDAQTDDDDEEDAAADDDDGYLKMTVTENQKLVFE 134

Query: 135 LRVRPSTILRFVVAAVCALLVIHLLGVSLVVVAHALI 171
           LRVRPSTILRFVVAAVCALLVIHLLGVSLVVVAHALI
Sbjct: 135 LRVRPSTILRFVVAAVCALLVIHLLGVSLVVVAHALI 171



>Os06g0711600 mRNA splicing factor SYF2 family protein
          Length = 340

 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 81/144 (56%), Gaps = 12/144 (8%)

Query: 15  DCVNSSNPYHECSDYCLRQIVKSRE---DNHR---WSRVHPHCINASNPYHACSNFCFRR 68
           +C+NSSNP+HECSDYCLR+I +++E   D  R      VHP CINASNPYH CS +CF+R
Sbjct: 15  ECINSSNPFHECSDYCLRKIAEAKERIEDEQRPPVDRTVHPDCINASNPYHVCSEYCFKR 74

Query: 69  IIHAKPSPSGLERPVQEPPASEAVPXXXXXXXXXXXXXXXXXXXXXXXXXGYLKMTVTEN 128
           I  AK   SGLER  QEPP+++A                           GY +M  TE 
Sbjct: 75  IADAK---SGLERAEQEPPSADAG-KSDAAQAEGGGGDDDAEQEDAGSDDGYPQM--TEK 128

Query: 129 QKLVFELRVRPSTILRFVVAAVCA 152
           QK +FELR++ +   +    A+ A
Sbjct: 129 QKKLFELRLKMNEARKANQQAMVA 152



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,823,202
Number of extensions: 167332
Number of successful extensions: 569
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 566
Number of HSP's successfully gapped: 2
Length of query: 171
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 77
Effective length of database: 12,127,685
Effective search space: 933831745
Effective search space used: 933831745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 152 (63.2 bits)