Os06g0711600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : mRNA splicing factor SYF2 family protein.
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Os06g0711600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : mRNA splicing factor SYF2 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.25 | 0.245 | 10.3 | -0.288 | 0.559 | -0.366 | -0.224 | -0.32 | 0.0495 | 5.46 | 1006 | 4792 | -- | -- |
| 27.44 | 0.244 | 10.3 | -0.316 | 0.559 | -0.377 | -0.211 | -- | 0.0536 | 5.44 | 1006 | 4776 | -- | -- |
| 27.37 | 0.244 | 10.3 | -0.29 | 0.558 | -0.366 | -- | -0.304 | 0.0497 | 5.44 | 1006 | 4790 | -- | -- |
| 27.54 | 0.244 | 10.3 | -0.314 | 0.557 | -0.376 | -- | -- | 0.0523 | 5.43 | 1006 | 4776 | -- | -- |
| 42.85 | 0.305 | 10.3 | -0.307 | -- | -0.385 | -- | -0.203 | 0.0619 | -- | 1007 | 4172 | -- | -- |
| 31.96 | 0.265 | 10.4 | -0.243 | 0.565 | -- | -0.224 | -- | -0.0504 | 5.55 | -- | -- | -- | -- |
| 32.09 | 0.265 | 10.4 | -0.244 | 0.563 | -- | -- | -- | -0.0494 | 5.53 | -- | -- | -- | -- |
| 42.8 | 0.305 | 10.3 | -0.315 | -- | -0.4 | -- | -- | 0.0882 | -- | 1006 | 4163 | -- | -- |
| 28.89 | 0.25 | 10.4 | -- | 0.547 | -0.418 | -- | -- | 0.0141 | 5.5 | 1006 | 12202 | -- | -- |
| 48.59 | 0.326 | 10.4 | -0.225 | -- | -- | -- | -- | -0.0357 | -- | -- | -- | -- | -- |
| 33.65 | 0.271 | 10.4 | -- | 0.559 | -- | -- | -- | -0.0223 | 5.54 | -- | -- | -- | -- |
| 45 | 0.312 | 10.4 | -- | -- | -0.427 | -- | -- | 0.0537 | -- | 1006 | 11374 | -- | -- |
| 49.93 | 0.33 | 10.4 | -- | -- | -- | -- | -- | -0.0107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.27 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 3 | 26.39 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 14 | 4 |
| 10 | 26.48 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 19 | 26.63 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 97 | 27.09 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 101 | 27.10 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 115 | 27.15 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 142 | 27.20 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 160 | 27.24 | atmosphere | 1000 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 181 | 27.26 | atmosphere | 1000 | 4320 | > th | dose dependent | rect. | 12 | 8 |
| 193 | 27.27 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 19 | 5 |
| 197 | 27.27 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 12 | 12 |
| 218 | 27.29 | atmosphere | 1005 | 4320 | > th | dose independent | sin | 21 | NA |
| 245 | 27.30 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 290 | 27.31 | atmosphere | 1005 | 14400 | > th | dose dependent | sin | 18 | NA |
| 319 | 27.32 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 532 | 27.37 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 21 | 15 |
| 534 | 27.37 | atmosphere | 1005 | 14400 | > th | dose dependent | no | NA | NA |
| 562 | 27.37 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 19 | 21 |
| 621 | 27.38 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 20 | 19 |
| 639 | 27.38 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 646 | 27.39 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 704 | 27.40 | atmosphere | 1005 | 4320 | < th | dose independent | sin | 20 | NA |
| 706 | 27.40 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 710 | 27.40 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 7 | 5 |
| 769 | 27.41 | atmosphere | 1010 | 14400 | > th | dose independent | sin | 7 | NA |
| 783 | 27.41 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 3 | 9 |
| 837 | 27.42 | atmosphere | 1010 | 14400 | > th | dose independent | sin | 5 | NA |
| 858 | 27.42 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 20 | 16 |
| 926 | 27.43 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 16 | 17 |
| 967 | 27.44 | atmosphere | 1010 | 14400 | > th | dose independent | no | NA | NA |
| 969 | 27.44 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 7 | 1 |