BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0711600 Os06g0711600|AK064384
         (340 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G16860.1  | chr2:7304139-7305959 REVERSE LENGTH=299            387   e-108

>AT2G16860.1 | chr2:7304139-7305959 REVERSE LENGTH=299
          Length = 298

 Score =  387 bits (994), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/300 (64%), Positives = 229/300 (76%), Gaps = 14/300 (4%)

Query: 50  DRTVHPDCINASNPYHVCSEYCFKRIADAK-------SGLERAEQEP--PSADAGKXXXX 100
           +R VHPDCINASNPYH C EYCFK+IA+AK       +GL +  ++   P  D       
Sbjct: 4   ERRVHPDCINASNPYHECVEYCFKKIAEAKARFEKQNTGLAKVHEQTREPLDD-----KR 58

Query: 101 XXXXXXXXXXXXXXXXXXXXXYPQMTEKQKKLFELRLKMNEARKANQQAMVAEKKRMEPR 160
                                  Q+T +QKKLFELRLKMNEARK+NQ  + +EKK+ME  
Sbjct: 59  IEEDSSEEEEEEEDNQEPQVDVTQLTGRQKKLFELRLKMNEARKSNQTDVGSEKKKMEAP 118

Query: 161 AESRGVSKQKWLEDRKKKIGKLLDSNGLDMTKSYMLDTQESAEAKYKKWEKEPAPYGWDV 220
            E++G+SKQKWLE RKKKIGKLLD+NGLDMT++YMLDTQE+AE+KYKKWEKEP P GWDV
Sbjct: 119 TETKGISKQKWLEGRKKKIGKLLDANGLDMTQAYMLDTQEAAESKYKKWEKEPTPAGWDV 178

Query: 221 FNQKTLYDAYKKRTKNIEVDMEAYNKAKEADPEFYRDASSLQYGKVSKVPEENIDRMVNE 280
           FNQKTLY+AYKKRTKNI+VD+E YN+ + ADPEFYR+ASSLQYGK  K  ++ ID+M  E
Sbjct: 179 FNQKTLYNAYKKRTKNIQVDLEEYNRMRAADPEFYREASSLQYGKAPKTSQDKIDKMAKE 238

Query: 281 LKERDEKRKAFSRRRKFHEDKDIDSINDRNEHFNKKVERAFGKYTLEIKNNLERGTALPD 340
           L +R++KR+ FSRRRKF E+KDIDSINDRNEHFNKK+ERAFGKYTLEIKNNLERGTALPD
Sbjct: 239 LLDREQKRQEFSRRRKFREEKDIDSINDRNEHFNKKIERAFGKYTLEIKNNLERGTALPD 298




 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 20/29 (68%), Positives = 25/29 (86%)

Query: 14 PECINSSNPFHECSDYCLRKIAEAKERIE 42
          P+CIN+SNP+HEC +YC +KIAEAK R E
Sbjct: 9  PDCINASNPYHECVEYCFKKIAEAKARFE 37



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.129    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,000,488
Number of extensions: 287114
Number of successful extensions: 1116
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1123
Number of HSP's successfully gapped: 3
Length of query: 340
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 241
Effective length of database: 8,392,385
Effective search space: 2022564785
Effective search space used: 2022564785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 112 (47.8 bits)