BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0703800 Os06g0703800|AK066056
         (197 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0703800  Conserved hypothetical protein                      345   1e-95
Os02g0139100  Conserved hypothetical protein                      263   7e-71

>Os06g0703800 Conserved hypothetical protein
          Length = 197

 Score =  345 bits (885), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 172/184 (93%), Positives = 172/184 (93%)

Query: 14  SYSYWVREATGDAAPLPAPRKIDAADLAAKPAPTTLGSVWNKAGTWEEKNLNSWANGRIK 73
           SYSYWVREATGDAAPLPAPRKIDAADLAAKPAPTTLGSVWNKAGTWEEKNLNSWANGRIK
Sbjct: 14  SYSYWVREATGDAAPLPAPRKIDAADLAAKPAPTTLGSVWNKAGTWEEKNLNSWANGRIK 73

Query: 74  DLLGSLDPLEFSTGKASVYEVSKCSGDAFLVTVRNKKRVGYTYELGLKFKGEWLIKEENK 133
           DLLGSLDPLEFSTGKASVYEVSKCSGDAFLVTVRNKKRVGYTYELGLKFKGEWLIKEENK
Sbjct: 74  DLLGSLDPLEFSTGKASVYEVSKCSGDAFLVTVRNKKRVGYTYELGLKFKGEWLIKEENK 133

Query: 134 KVKGYLDIPEFSFGELEDLEVQISFTDIKDLSSDNKAQISKDLKSFLAPIXXXXXXXXXX 193
           KVKGYLDIPEFSFGELEDLEVQISFTDIKDLSSDNKAQISKDLKSFLAPI          
Sbjct: 134 KVKGYLDIPEFSFGELEDLEVQISFTDIKDLSSDNKAQISKDLKSFLAPIREKLRKFEEE 193

Query: 194 XXDR 197
             DR
Sbjct: 194 LKDR 197



>Os02g0139100 Conserved hypothetical protein
          Length = 202

 Score =  263 bits (672), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 136/187 (72%), Positives = 147/187 (78%), Gaps = 3/187 (1%)

Query: 14  SYSYWVREATGDAAPLPAPRKIDAADLAAKPAPTT---LGSVWNKAGTWEEKNLNSWANG 70
           SY YWVREATGDAAPLP PRK+DA   AA         LGSVWN+AGTWEEKNLNSWAN 
Sbjct: 16  SYRYWVREATGDAAPLPVPRKLDATAAAAANGNGNPPPLGSVWNQAGTWEEKNLNSWANS 75

Query: 71  RIKDLLGSLDPLEFSTGKASVYEVSKCSGDAFLVTVRNKKRVGYTYELGLKFKGEWLIKE 130
           RIK++LGSLD LEF TGKAS+  VSKC GDAFLVTVRNKKRVGYTYEL LKFKGEWLIKE
Sbjct: 76  RIKEMLGSLDSLEFPTGKASLDGVSKCIGDAFLVTVRNKKRVGYTYELSLKFKGEWLIKE 135

Query: 131 ENKKVKGYLDIPEFSFGELEDLEVQISFTDIKDLSSDNKAQISKDLKSFLAPIXXXXXXX 190
           E  KVKG+LDIPEFSFGELEDLEV++ FTD K L+SD+K QI KDLKSFL+PI       
Sbjct: 136 EKMKVKGHLDIPEFSFGELEDLEVEVRFTDDKGLASDDKRQICKDLKSFLSPIREKLRAF 195

Query: 191 XXXXXDR 197
                DR
Sbjct: 196 EEELKDR 202



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,193,853
Number of extensions: 264096
Number of successful extensions: 614
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 613
Number of HSP's successfully gapped: 2
Length of query: 197
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 101
Effective length of database: 12,023,257
Effective search space: 1214348957
Effective search space used: 1214348957
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 153 (63.5 bits)