Os06g0703800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0703800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 136.83 | 0.55 | 8.75 | -2 | 0.882 | 2.23 | 0.952 | -0.695 | 0.164 | 7.02 | 7.12 | 46 | -- | -- |
| 137.21 | 0.546 | 8.74 | -1.9 | 0.89 | 2.24 | 0.949 | -- | 0.187 | 6.93 | 5.929 | 46 | -- | -- |
| 138.74 | 0.549 | 8.76 | -2.01 | 0.904 | 2.32 | -- | -0.762 | 0.145 | 6.59 | 6.032 | 46 | -- | -- |
| 139.21 | 0.55 | 8.75 | -1.9 | 0.906 | 2.31 | -- | -- | 0.174 | 6.57 | 5.076 | 44 | -- | -- |
| 174.14 | 0.618 | 8.77 | -1.9 | -- | 1.92 | -- | -0.763 | 0.214 | -- | 10.01 | 14 | -- | -- |
| 184.95 | 0.638 | 8.67 | -1.49 | 0.789 | -- | 1.23 | -- | 0.495 | 9.77 | -- | -- | -- | -- |
| 190.57 | 0.646 | 8.67 | -1.44 | 0.789 | -- | -- | -- | 0.496 | 9.55 | -- | -- | -- | -- |
| 174.63 | 0.618 | 8.75 | -1.79 | -- | 1.91 | -- | -- | 0.243 | -- | 5.076 | 44 | -- | -- |
| 224.54 | 0.702 | 8.68 | -- | 0.746 | 1.4 | -- | -- | 0.49 | 7.72 | 12.98 | 42 | -- | -- |
| 227.29 | 0.704 | 8.7 | -1.45 | -- | -- | -- | -- | 0.498 | -- | -- | -- | -- | -- |
| 245.29 | 0.733 | 8.64 | -- | 0.792 | -- | -- | -- | 0.657 | 9.68 | -- | -- | -- | -- |
| 254.57 | 0.746 | 8.69 | -- | -- | 1.35 | -- | -- | 0.506 | -- | 12.98 | 42 | -- | -- |
| 282.49 | 0.785 | 8.66 | -- | -- | -- | -- | -- | 0.659 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 133.21 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 2 | 133.92 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 4 | 134.24 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 12 | 135.66 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 24 | 136.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 43 | 137.20 | temperature | 15 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 44 | 137.21 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 55 | 137.59 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 11 |
| 59 | 137.66 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 62 | 137.67 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 69 | 137.77 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 14 |
| 86 | 137.94 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 95 | 138.06 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 97 | 138.07 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 101 | 138.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 103 | 138.10 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 110 | 138.19 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 113 | 138.23 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 119 | 138.35 | humidity | 90 | 14400 | > th | dose dependent | sin | 8 | NA |
| 122 | 138.38 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 136 | 138.50 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 3 |
| 153 | 138.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 3 |
| 172 | 138.86 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 173 | 138.86 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 7 |
| 179 | 138.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 1 |
| 181 | 138.91 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 189 | 138.98 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 22 |
| 201 | 139.12 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 13 |
| 209 | 139.17 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 10 |
| 233 | 139.31 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 260 | 139.47 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 21 |
| 297 | 139.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 299 | 139.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 379 | 139.93 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 396 | 140.01 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 407 | 140.06 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 416 | 140.13 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 445 | 140.27 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 451 | 140.30 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 460 | 140.35 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 468 | 140.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 473 | 140.40 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 562 | 140.73 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 624 | 140.92 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 659 | 141.09 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 731 | 141.36 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 750 | 141.44 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 755 | 141.45 | radiation | 1 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 769 | 141.49 | temperature | 10 | 1440 | > th | dose dependent | sin | 10 | NA |
| 780 | 141.51 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 13 |
| 808 | 141.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 13 |
| 856 | 141.74 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 880 | 141.82 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 892 | 141.85 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 17 |
| 969 | 142.13 | radiation | 1 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 973 | 142.13 | radiation | 1 | 14400 | < th | dose dependent | rect. | 10 | 2 |