BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0703800 Os06g0703800|AK066056
         (197 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58110.1  | chr5:23515275-23516479 FORWARD LENGTH=197          220   3e-58

>AT5G58110.1 | chr5:23515275-23516479 FORWARD LENGTH=197
          Length = 196

 Score =  220 bits (561), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 104/170 (61%), Positives = 131/170 (77%)

Query: 14  SYSYWVREATGDAAPLPAPRKIDAADLAAKPAPTTLGSVWNKAGTWEEKNLNSWANGRIK 73
           SY YWVREAT DAAP P P+K+   D++   AP +LGS+WN+AGTWEEK+L  WA  R+K
Sbjct: 13  SYRYWVREATSDAAPPPLPQKLSNNDVSLNTAPASLGSLWNRAGTWEEKSLTKWATDRLK 72

Query: 74  DLLGSLDPLEFSTGKASVYEVSKCSGDAFLVTVRNKKRVGYTYELGLKFKGEWLIKEENK 133
           +LLGS+  L+FS+GKA + +V++C GDAFLVTVRNKKRVGYTYEL LK +GEW  +E  K
Sbjct: 73  ELLGSVGSLQFSSGKAEIIDVNRCVGDAFLVTVRNKKRVGYTYELSLKVEGEWSFEENMK 132

Query: 134 KVKGYLDIPEFSFGELEDLEVQISFTDIKDLSSDNKAQISKDLKSFLAPI 183
           KVKG L+IPEFSFGEL+DLEV +  ++ K+LS   K +I  D+K FL PI
Sbjct: 133 KVKGSLEIPEFSFGELDDLEVDVKLSEDKELSQQLKQRIKLDMKQFLEPI 182



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,092,054
Number of extensions: 179255
Number of successful extensions: 319
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 104
Effective length of database: 8,556,881
Effective search space: 889915624
Effective search space used: 889915624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 109 (46.6 bits)