BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0699500 Os06g0699500|AK062047
(115 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0699500 Macrophage migration inhibitory factor family ... 209 4e-55
Os11g0107500 Macrophage migration inhibitory factor family ... 120 2e-28
Os12g0107500 Macrophage migration inhibitory factor family ... 119 4e-28
>Os06g0699500 Macrophage migration inhibitory factor family protein
Length = 115
Score = 209 bits (531), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 105/115 (91%), Positives = 105/115 (91%)
Query: 1 MPQLSLTTNVPXXXXXXXXXXKDCSKALARIIGKPESYVMVSISGSVPMSFAASEEPAAY 60
MPQLSLTTNVP KDCSKALARIIGKPESYVMVSISGSVPMSFAASEEPAAY
Sbjct: 1 MPQLSLTTNVPVDAVVAADIIKDCSKALARIIGKPESYVMVSISGSVPMSFAASEEPAAY 60
Query: 61 GELMSIGGIGPGVNGKLSAALAEILETKLSVSRSRFYVKFDDVKGFNLGFNGSTF 115
GELMSIGGIGPGVNGKLSAALAEILETKLSVSRSRFYVKFDDVKGFNLGFNGSTF
Sbjct: 61 GELMSIGGIGPGVNGKLSAALAEILETKLSVSRSRFYVKFDDVKGFNLGFNGSTF 115
>Os11g0107500 Macrophage migration inhibitory factor family protein
Length = 121
Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 75/106 (70%)
Query: 1 MPQLSLTTNVPXXXXXXXXXXKDCSKALARIIGKPESYVMVSISGSVPMSFAASEEPAAY 60
MP L+++TNV D SK +A IIGKPE+YVMV + GSVPM+F ++EPAAY
Sbjct: 1 MPCLNVSTNVNLDGVDTSAVLADASKTVATIIGKPEAYVMVVLKGSVPMAFGGTQEPAAY 60
Query: 61 GELMSIGGIGPGVNGKLSAALAEILETKLSVSRSRFYVKFDDVKGF 106
GEL+SIGG+ P VN KLSA +A ILE+KLS+ + RFY+KF D K
Sbjct: 61 GELVSIGGLNPDVNKKLSAGIASILESKLSIPKGRFYLKFYDSKAH 106
>Os12g0107500 Macrophage migration inhibitory factor family protein
Length = 134
Score = 119 bits (299), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 75/104 (72%)
Query: 1 MPQLSLTTNVPXXXXXXXXXXKDCSKALARIIGKPESYVMVSISGSVPMSFAASEEPAAY 60
MP L+++TNV D SK +A IIGKPE+YVMV + GSVPM+F ++EPAAY
Sbjct: 1 MPCLNVSTNVNLDGVDTSAVLADASKTVATIIGKPEAYVMVVLKGSVPMAFGGTQEPAAY 60
Query: 61 GELMSIGGIGPGVNGKLSAALAEILETKLSVSRSRFYVKFDDVK 104
GEL+SIGG+ P VN KLSA +A ILE+KLS+ + RFY+KF D K
Sbjct: 61 GELVSIGGLNPDVNKKLSAGIASILESKLSIPKGRFYLKFYDSK 104
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.133 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,122,623
Number of extensions: 103668
Number of successful extensions: 266
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 3
Length of query: 115
Length of database: 17,035,801
Length adjustment: 82
Effective length of query: 33
Effective length of database: 12,754,253
Effective search space: 420890349
Effective search space used: 420890349
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)