BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0685200 Os06g0685200|J080077F09
(421 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0685200 Conserved hypothetical protein 752 0.0
Os02g0160200 Cyclin-like F-box domain containing protein 112 4e-25
Os06g0684900 69 8e-12
>Os06g0685200 Conserved hypothetical protein
Length = 421
Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/406 (91%), Positives = 370/406 (91%)
Query: 1 MVKRQREEEPATASQSGDDDSNSDEWKDFLNLXXXXXXXXXXXXCNLXXXXXXXXXXXXS 60
MVKRQREEEPATASQSGDDDSNSDEWKDFLNL CNL S
Sbjct: 1 MVKRQREEEPATASQSGDDDSNSDEWKDFLNLDGGEEAAEVDDDCNLAPPEKDAEAAKAS 60
Query: 61 QSGDDDSNTDQWKGYLNLXXXXXXXXXXXXRNLDQPPEKDAEAAKVDVDRKLDQLPEKDA 120
QSGDDDSNTDQWKGYLNL RNLDQPPEKDAEAAKVDVDRKLDQLPEKDA
Sbjct: 61 QSGDDDSNTDQWKGYLNLEDGEEAAEVDDDRNLDQPPEKDAEAAKVDVDRKLDQLPEKDA 120
Query: 121 EAAKVDGDRITALQEKARVRILDFLPIKSVILMGSLCKRWREMYGLYWRDVAVDVELPTD 180
EAAKVDGDRITALQEKARVRILDFLPIKSVILMGSLCKRWREMYGLYWRDVAVDVELPTD
Sbjct: 121 EAAKVDGDRITALQEKARVRILDFLPIKSVILMGSLCKRWREMYGLYWRDVAVDVELPTD 180
Query: 181 GDALSKLEERAGQQEPKRRLRYFFLLVVERKNVQREYFNSCLEYAGKCSPEVIHISDRGG 240
GDALSKLEERAGQQEPKRRLRYFFLLVVERKNVQREYFNSCLEYAGKCSPEVIHISDRGG
Sbjct: 181 GDALSKLEERAGQQEPKRRLRYFFLLVVERKNVQREYFNSCLEYAGKCSPEVIHISDRGG 240
Query: 241 AGRKFKMHLTSKQLVRLSIIGVALGHFQGKFCEGVSFPTLEEIHIKNSTINKMDDLKNLV 300
AGRKFKMHLTSKQLVRLSIIGVALGHFQGKFCEGVSFPTLEEIHIKNSTINKMDDLKNLV
Sbjct: 241 AGRKFKMHLTSKQLVRLSIIGVALGHFQGKFCEGVSFPTLEEIHIKNSTINKMDDLKNLV 300
Query: 301 GACPILRVLDLRGCKTITQIDVDTAGEHLMSLTVMDCERVRRLTAGKHLRSFRYSGNFLT 360
GACPILRVLDLRGCKTITQIDVDTAGEHLMSLTVMDCERVRRLTAGKHLRSFRYSGNFLT
Sbjct: 301 GACPILRVLDLRGCKTITQIDVDTAGEHLMSLTVMDCERVRRLTAGKHLRSFRYSGNFLT 360
Query: 361 SLSLPDNDSLADLFIGFPRSQSTTPGPENSFKRLPDLSNLTFLTLC 406
SLSLPDNDSLADLFIGFPRSQSTTPGPENSFKRLPDLSNLTFLTLC
Sbjct: 361 SLSLPDNDSLADLFIGFPRSQSTTPGPENSFKRLPDLSNLTFLTLC 406
>Os02g0160200 Cyclin-like F-box domain containing protein
Length = 495
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 146/307 (47%), Gaps = 41/307 (13%)
Query: 128 DRITALQEKARVRILDFLPIKSVILMGSLCKRWREMYGLYWRD-VAVDVELPTDGDALS- 185
DRI+ L + R++IL LP+KS I G+L RWR ++ W D ++DV LP+ G A S
Sbjct: 21 DRISDLPDALRLQILSLLPLKSAIRTGALSSRWRGLWEQRWPDPSSLDVRLPSGGGAASA 80
Query: 186 -----KLEERAGQQEPKRRLRYFFLLVVERKNVQREYFNSCLEYAGKCSPEVIHISDRGG 240
+ E AG RR F L + +EYA C E + + GG
Sbjct: 81 SVAALRAEHLAGIDRRGRRRMDLFSLAFHAGQLAPPELKRFIEYAAACDVEEVRLRLDGG 140
Query: 241 AGR----------KFKMH--LTSKQLVRLSIIGVALGHFQGKFCEGVSFPTLEEIHIKNS 288
GR +H + SK L RLS+ G+ H V+ TLE IH +
Sbjct: 141 GGRGARGGTRRPGALAVHFPIGSKLLARLSVRGL---HLTASANAMVA--TLEVIHFHSV 195
Query: 289 TINKMDDLKNLVGACPILRVLDLRGCKTITQIDVDTAGEHLMSLTVMDCERVR--RLTAG 346
++ L+ +V ACP LR L+LR C+ + +ID +L SLTV+DC R R+ +
Sbjct: 196 SLTDAA-LRRVVSACPRLRELELRYCRHLRRIDFTVGASNLKSLTVVDCSRATELRVPSA 254
Query: 347 KHLRSFRYSGNFLTS-LSLPDNDSLADLFIGFPRSQSTTPGPENSFKR------LPDLSN 399
LRSFR+SG FL S + D + L++ + GPE R +P LSN
Sbjct: 255 PLLRSFRFSGAFLCSNIFGSTADCVEHLYL-------CSGGPETGLPRTNLPSAVPRLSN 307
Query: 400 LTFLTLC 406
LT LTLC
Sbjct: 308 LTVLTLC 314
>Os06g0684900
Length = 488
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 123/307 (40%), Gaps = 48/307 (15%)
Query: 128 DRITALQEKARVRILDFLPIKSVILMGSLCKRWREMYGLYWRDVAVDVEL-----PTDGD 182
D + + + A +RI+ FLP++S I L K W ++ W + E+ P+ D
Sbjct: 55 DPMVVIPDDAVLRIISFLPLESAIRTTVLSKEWLRLWKEDWGQKSRRYEIRARCAPSVED 114
Query: 183 ALSKLEERAGQQEPKRRLRYFFLLVVERKNVQREYFNSCLEYAGKCSPEVIHIS-DRGGA 241
L LEE + VV ++ + +E + E +H+
Sbjct: 115 LLKILEEERRLERLS---------VVVHTIMKSSHLREIIERSADRRVEQLHVELTNPNV 165
Query: 242 GRKFKMHLTSKQLVRLSIIGVALGHF--------QGKFCEGVSFPTLEEIHIKNSTINKM 293
K + HL V +AL H + +F F L EI +I
Sbjct: 166 VDKVRFHLPILSRV------IALQHLSLRQIVVSKMRFKPQQRFNELSEICFHFVSIESY 219
Query: 294 DDLKNLVGACPILRVLDLRGCKTITQIDVDTAGEHLMSLTVMDCERVRR--LTAGKHLRS 351
L+N++ CP LRVLDLR C + + + G L SLT+ C+ + + + LRS
Sbjct: 220 M-LRNVITRCPNLRVLDLRSCFDLDAVAISPGGPKLSSLTIAGCKHLNKVNVVGVTSLRS 278
Query: 352 FRYSGNFLTSLSLPDN---DSLADLFIGF-----PRSQSTTPGPENS--------FKRLP 395
YSG FL+S LP S DL+I + P + P E + F+RL
Sbjct: 279 VFYSGRFLSSFYLPRTSRRSSFTDLYICYDGPIIPMIVPSLPDEERTTQLKWLGGFRRLK 338
Query: 396 DLSNLTF 402
+L L F
Sbjct: 339 ELQLLMF 345
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,206,455
Number of extensions: 515461
Number of successful extensions: 1884
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1873
Number of HSP's successfully gapped: 3
Length of query: 421
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 317
Effective length of database: 11,605,545
Effective search space: 3678957765
Effective search space used: 3678957765
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)