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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0685200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.0154) R2 : 0.00635
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0553 (0.0324) R2dN8 : 0.0082 R2N8 : 0.00635
σ : 0.29
deviance : 38.58
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
36.61 0.284 3.02 0.137 0.133 -0.124 -0.0614 -0.707 0.033 6.64 78 6005 -- --
37.09 0.284 3.01 0.0707 0.138 -0.159 -0.0402 -- 0.023 6.73 83 10427 -- --
36.62 0.282 3.02 0.137 0.135 -0.126 -- -0.713 0.0323 6.73 77.84 6045 -- --
37.08 0.284 3.01 0.0609 0.138 -0.175 -- -- 0.0103 6.83 82.94 10416 -- --
37.5 0.285 3.02 0.142 -- -0.113 -- -0.709 0.0394 -- 77.49 5849 -- --
37.61 0.288 3 0.0452 0.131 -- -0.0861 -- 0.0577 6.61 -- -- -- --
37.63 0.287 3 0.0441 0.131 -- -- -- 0.058 6.78 -- -- -- --
38.01 0.287 3.02 0.0844 -- -0.178 -- -- 0.00177 -- 86.37 7028 -- --
37.18 0.284 3.01 -- 0.14 -0.166 -- -- 0.00643 6.79 82.84 10427 -- --
38.52 0.29 3.01 0.0471 -- -- -- -- 0.0606 -- -- -- -- --
37.68 0.287 3 -- 0.131 -- -- -- 0.0531 6.76 -- -- -- --
38.15 0.288 3.02 -- -- -0.143 -- -- 0.00126 -- 85 7219 -- --
38.58 0.29 3.01 -- -- -- -- -- 0.0553 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.05 temperature 25.0 30 > th dose dependent rect. 6 1
3 33.23 atmosphere 1010.0 30 < th dose independent rect. 6 1
4 33.31 radiation 10.0 30 < th dose independent rect. 6 1
7 33.94 atmosphere 1010.0 30 < th dose dependent rect. 6 1
9 33.96 wind 3.0 30 > th dose dependent rect. 6 1
11 34.19 atmosphere 1005.0 90 > th dose dependent rect. 2 1
12 34.36 atmosphere 1005.0 10 > th dose dependent rect. 2 2
14 34.48 humidity 90.0 30 < th dose dependent rect. 6 1
15 34.50 atmosphere 1000.0 30 > th dose independent rect. 3 23
19 34.62 wind 3.0 30 > th dose independent rect. 6 1
22 34.67 temperature 25.0 90 > th dose independent rect. 1 2
24 34.71 temperature 20.0 30 > th dose dependent rect. 2 1
26 34.72 wind 3.0 30 < th dose independent rect. 2 1
30 34.72 temperature 10.0 30 > th dose independent rect. 2 1
34 34.72 temperature 30.0 30 < th dose independent rect. 2 1
35 34.72 humidity 50.0 30 > th dose independent rect. 2 1
38 34.72 humidity 90.0 30 > th dose independent rect. 2 1
39 34.72 atmosphere 995.0 30 > th dose independent rect. 2 1
40 34.72 atmosphere 1010.0 30 < th dose independent rect. 2 1
42 34.72 radiation 1.0 30 < th dose independent rect. 2 1
47 34.72 precipitation 0.1 30 < th dose independent rect. 2 1
48 34.72 temperature 10.0 30 > th dose independent rect. 3 23
49 34.72 wind 3.0 30 < th dose dependent rect. 2 1
53 34.72 temperature 10.0 30 > th dose dependent rect. 2 1
56 34.72 humidity 50.0 30 > th dose dependent rect. 2 1
61 34.72 atmosphere 1015.0 30 < th dose dependent rect. 2 1
62 34.72 radiation 1.0 30 < th dose dependent rect. 2 1
67 34.72 precipitation 0.1 30 < th dose dependent rect. 2 1
71 34.73 atmosphere 1005.0 30 > th dose independent rect. 2 1
78 34.75 wind 1.0 30 > th dose independent rect. 2 1
79 34.75 temperature 30.0 30 < th dose dependent rect. 2 1
85 34.76 radiation 1.0 4320 < th dose dependent rect. 3 1
88 34.77 precipitation 0.1 30 < th dose independent rect. 3 23
94 34.77 precipitation 0.1 30 < th dose dependent rect. 3 23
97 34.78 wind 9.0 1440 < th dose independent rect. 3 1
99 34.78 temperature 10.0 1440 > th dose independent rect. 3 1
102 34.78 temperature 30.0 1440 < th dose independent rect. 3 1
106 34.78 humidity 50.0 1440 > th dose independent rect. 3 1
115 34.78 atmosphere 995.0 1440 > th dose independent rect. 3 1
116 34.78 radiation 1.0 1440 < th dose independent rect. 3 1
136 34.78 temperature 10.0 1440 > th dose independent rect. 4 23
195 34.86 radiation 1.0 10 > th dose dependent rect. 6 1
203 34.94 radiation 20.0 30 < th dose dependent rect. 6 1
206 34.96 temperature 25.0 30 > th dose dependent rect. 2 5
208 34.98 temperature 25.0 30 > th dose independent rect. 6 1
213 35.00 wind 9.0 30 < th dose independent rect. 3 23
224 35.11 humidity 50.0 30 > th dose independent rect. 3 23
263 35.29 humidity 90.0 90 < th dose independent rect. 2 1
273 35.39 humidity 90.0 30 < th dose independent rect. 6 1
276 35.41 wind 9.0 1440 < th dose independent rect. 7 1
277 35.41 temperature 10.0 1440 > th dose independent rect. 7 1
281 35.41 temperature 30.0 1440 < th dose independent rect. 7 1
285 35.41 humidity 50.0 1440 > th dose independent rect. 7 1
290 35.41 atmosphere 995.0 1440 > th dose independent rect. 7 1
291 35.41 atmosphere 1015.0 1440 < th dose independent rect. 7 1
292 35.41 temperature 10.0 1440 > th dose independent rect. 8 23
296 35.42 atmosphere 1000.0 30 > th dose independent rect. 6 1
299 35.44 wind 5.0 30 < th dose independent rect. 6 1
302 35.44 temperature 10.0 30 > th dose independent rect. 6 1
305 35.44 temperature 30.0 30 < th dose independent rect. 6 1
306 35.44 humidity 50.0 30 > th dose independent rect. 6 1
314 35.44 precipitation 0.1 30 < th dose independent rect. 6 1
315 35.44 temperature 10.0 30 > th dose independent rect. 7 23
316 35.44 precipitation 0.1 30 < th dose dependent rect. 6 1
318 35.45 radiation 1.0 30 > th dose independent rect. 6 1
320 35.46 wind 9.0 30 < th dose independent rect. 7 23
322 35.48 humidity 90.0 90 < th dose independent rect. 1 6
327 35.53 radiation 40.0 720 < th dose independent rect. 15 16
328 35.54 temperature 10.0 720 > th dose independent rect. 7 8
329 35.54 atmosphere 1015.0 720 < th dose independent rect. 7 8
330 35.54 temperature 10.0 720 > th dose independent rect. 15 16
333 35.56 wind 9.0 720 < th dose independent rect. 19 8
336 35.58 temperature 10.0 720 > th dose independent rect. 19 8
337 35.58 temperature 30.0 720 < th dose independent rect. 19 8
338 35.58 humidity 50.0 720 > th dose independent rect. 19 8
339 35.58 atmosphere 995.0 720 > th dose independent rect. 19 8
340 35.58 radiation 1.0 720 < th dose independent rect. 19 8
345 35.58 temperature 10.0 720 > th dose independent rect. 3 16
347 35.58 radiation 1.0 720 < th dose dependent rect. 19 8
352 35.59 humidity 50.0 30 > th dose dependent rect. 6 1
357 35.61 atmosphere 995.0 720 > th dose independent rect. 7 8
364 35.64 wind 9.0 30 < th dose dependent rect. 6 1
387 35.68 temperature 25.0 90 > th dose independent rect. 1 6
393 35.69 atmosphere 1015.0 720 < th dose independent rect. 3 16
402 35.73 atmosphere 995.0 30 > th dose dependent rect. 6 1
403 35.74 precipitation 0.1 720 < th dose independent rect. 19 8
404 35.74 precipitation 0.1 720 < th dose dependent rect. 19 8
408 35.77 precipitation 0.1 720 < th dose independent rect. 15 16
409 35.77 precipitation 0.1 720 < th dose dependent rect. 15 16
428 35.88 temperature 25.0 720 > th dose independent rect. 1 1
433 35.89 wind 9.0 720 < th dose independent rect. 15 16
446 35.93 atmosphere 995.0 720 > th dose independent rect. 23 16
448 35.93 temperature 30.0 30 < th dose independent rect. 3 23
452 35.94 wind 9.0 720 < th dose independent rect. 7 8
463 35.98 precipitation 0.1 720 < th dose independent rect. 7 8
464 35.98 precipitation 0.1 720 < th dose dependent rect. 7 8
485 36.06 atmosphere 1015.0 30 < th dose independent rect. 3 23
488 36.08 temperature 10.0 720 > th dose independent rect. 15 8
489 36.08 temperature 10.0 720 > th dose independent rect. 23 16
518 36.12 atmosphere 995.0 30 > th dose independent rect. 7 23
519 36.12 humidity 80.0 4320 < th dose dependent rect. 1 1
525 36.12 atmosphere 995.0 30 > th dose dependent rect. 3 23
556 36.16 wind 9.0 30 < th dose dependent rect. 3 23
558 36.17 temperature 10.0 720 > th dose independent rect. 3 8
559 36.17 atmosphere 995.0 720 > th dose independent rect. 3 8
560 36.17 temperature 10.0 720 > th dose independent rect. 11 16
563 36.18 precipitation 0.1 720 < th dose independent rect. 15 8
564 36.18 precipitation 0.1 720 < th dose dependent rect. 15 8
567 36.20 humidity 90.0 720 < th dose independent rect. 1 1
571 36.20 temperature 30.0 30 < th dose dependent rect. 6 1
573 36.21 temperature 25.0 1440 < th dose independent rect. 1 1
579 36.21 radiation 10.0 30 < th dose dependent rect. 3 23
608 36.24 atmosphere 995.0 720 > th dose independent rect. 3 16
615 36.25 radiation 40.0 720 < th dose independent rect. 15 8
618 36.26 wind 9.0 720 < th dose independent rect. 3 8
619 36.26 wind 9.0 720 < th dose independent rect. 3 16
627 36.28 temperature 25.0 270 > th dose independent rect. 23 8
638 36.31 precipitation 0.1 720 < th dose independent rect. 11 16
640 36.31 precipitation 0.1 720 < th dose dependent rect. 11 16
644 36.32 humidity 50.0 720 > th dose independent rect. 3 8
651 36.33 radiation 1.0 90 < th dose independent rect. 3 22
659 36.35 wind 1.0 10 < th dose independent rect. 15 12
678 36.37 humidity 90.0 90 < th dose independent rect. 1 20
683 36.38 atmosphere 995.0 720 > th dose independent rect. 15 16
684 36.38 wind 1.0 10 > th dose independent rect. 8 22
686 36.38 temperature 25.0 270 > th dose dependent rect. 23 8
689 36.40 humidity 90.0 90 < th dose dependent rect. 2 1
691 36.40 humidity 90.0 90 < th dose dependent rect. 2 5
742 36.43 wind 1.0 30 > th dose independent rect. 3 23
753 36.45 humidity 80.0 4320 < th dose independent rect. 1 1
760 36.46 radiation 40.0 1440 < th dose independent rect. 7 1
782 36.49 atmosphere 1000.0 10 > th dose independent rect. 8 18
786 36.49 wind 3.0 30 < th dose dependent rect. 2 6
793 36.50 atmosphere 1005.0 30 > th dose dependent rect. 2 6
795 36.50 humidity 50.0 30 > th dose dependent rect. 3 23
802 36.52 atmosphere 1000.0 10 > th dose independent rect. 14 12
803 36.52 wind 1.0 10 < th dose independent rect. 8 19
804 36.52 wind 1.0 30 < th dose independent rect. 6 21
805 36.52 temperature 25.0 720 > th dose dependent rect. 1 1
810 36.53 atmosphere 1000.0 10 > th dose independent rect. 16 10
826 36.54 wind 1.0 30 > th dose dependent rect. 2 1
835 36.55 humidity 90.0 720 < th dose independent rect. 24 7
836 36.55 atmosphere 1015.0 720 < th dose independent rect. 3 8
837 36.55 precipitation 0.1 720 < th dose independent rect. 5 8
838 36.55 precipitation 0.1 720 < th dose independent rect. 1 16
841 36.55 atmosphere 995.0 720 > th dose independent rect. 3 23
845 36.55 precipitation 0.1 720 < th dose dependent rect. 5 8
846 36.55 precipitation 0.1 720 < th dose dependent rect. 1 16
851 36.56 humidity 60.0 10 > th dose independent rect. 14 12
872 36.58 humidity 90.0 90 < th dose independent rect. 1 16
878 36.58 atmosphere 995.0 30 > th dose dependent rect. 8 18
882 36.59 humidity 80.0 4320 > th dose independent rect. 1 1
897 36.60 wind 1.0 10 > th dose independent sin 16 NA
898 36.60 wind 1.0 720 > th dose independent rect. 15 8
899 36.60 temperature 10.0 720 > th dose independent rect. 17 8
900 36.60 radiation 30.0 720 < th dose independent rect. 17 8
904 36.60 radiation 40.0 30 < th dose independent rect. 14 12
908 36.60 temperature 10.0 720 > th dose independent rect. 1 16
915 36.61 humidity 90.0 720 > th dose independent rect. 3 1
916 36.61 atmosphere 995.0 720 > th dose independent rect. 14 1
931 36.61 wind 9.0 720 < th dose dependent rect. 2 1
947 36.62 wind 9.0 720 < th dose independent rect. 15 8
956 36.62 radiation 20.0 10 < th dose dependent rect. 16 10
957 36.62 wind 3.0 30 < th dose dependent rect. 2 11
973 36.63 radiation 40.0 10 < th dose dependent rect. 14 12
975 36.64 temperature 10.0 720 > th dose independent rect. 5 8
976 36.64 atmosphere 995.0 720 > th dose independent rect. 5 8
977 36.64 atmosphere 1015.0 720 < th dose independent rect. 5 8
979 36.64 wind 9.0 10 < th dose independent rect. 2 12
982 36.64 temperature 10.0 720 > th dose independent rect. 13 16