BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0669700 Os06g0669700|AK070871
(166 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0669700 Similar to Myb-related protein 338 9e-94
Os06g0105800 Homeodomain-like containing protein 209 7e-55
Os01g0156000 Similar to Myb family DNA-binding protein 73 8e-14
>Os06g0669700 Similar to Myb-related protein
Length = 166
Score = 338 bits (867), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MSMDTSPVIRNTNASAVVPSWDNSIAQPLSASRTQGTGAVATNNCSSSIESPSTTWPTSE 60
MSMDTSPVIRNTNASAVVPSWDNSIAQPLSASRTQGTGAVATNNCSSSIESPSTTWPTSE
Sbjct: 1 MSMDTSPVIRNTNASAVVPSWDNSIAQPLSASRTQGTGAVATNNCSSSIESPSTTWPTSE 60
Query: 61 AVEQENMLRPLRAMPDFAQVYSFLGSIFDPDTSGHLQTLKAMDPIDVETVLLLMRNLSMN 120
AVEQENMLRPLRAMPDFAQVYSFLGSIFDPDTSGHLQTLKAMDPIDVETVLLLMRNLSMN
Sbjct: 61 AVEQENMLRPLRAMPDFAQVYSFLGSIFDPDTSGHLQTLKAMDPIDVETVLLLMRNLSMN 120
Query: 121 LTSPNFAAHLSLLSSCNSGGDPIKSEGMENLGSPQSCHLPFMVTSE 166
LTSPNFAAHLSLLSSCNSGGDPIKSEGMENLGSPQSCHLPFMVTSE
Sbjct: 121 LTSPNFAAHLSLLSSCNSGGDPIKSEGMENLGSPQSCHLPFMVTSE 166
>Os06g0105800 Homeodomain-like containing protein
Length = 298
Score = 209 bits (532), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 105/164 (64%), Positives = 125/164 (76%), Gaps = 4/164 (2%)
Query: 3 MDTSPVIRNTNASAVVPSWDNSIAQPLSASRTQGTGAVATNNCSSSIESPSTTWPTSEAV 62
MD SPV RN NA+ V SWD+++AQ S T G A NNCSSS+ES S T PTSEA+
Sbjct: 139 MDISPVARNFNANDVFSSWDSALAQSFSPRHTHG----AANNCSSSVESQSGTCPTSEAI 194
Query: 63 EQENMLRPLRAMPDFAQVYSFLGSIFDPDTSGHLQTLKAMDPIDVETVLLLMRNLSMNLT 122
EQE ML LRAMPDFAQVY+FLGSIFDP+TSGHLQ L+ MDPIDVETVLLLM+NLS+NLT
Sbjct: 195 EQEIMLPTLRAMPDFAQVYNFLGSIFDPETSGHLQRLREMDPIDVETVLLLMKNLSINLT 254
Query: 123 SPNFAAHLSLLSSCNSGGDPIKSEGMENLGSPQSCHLPFMVTSE 166
+PNF AH +L+S G D +K E + +LGS + HLPFMVT++
Sbjct: 255 NPNFEAHRKVLASHGYGMDQVKHENLGDLGSTHTLHLPFMVTTK 298
>Os01g0156000 Similar to Myb family DNA-binding protein
Length = 306
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 62/107 (57%), Gaps = 9/107 (8%)
Query: 38 GAVATNNCSSSIESPSTTWPTSEAVEQENMLRPLRAMPD---FAQVYSFLGSIFDPDT-- 92
GA + +N S ++ T+ V+ E + PL PD FAQVY F+G IFDPD+
Sbjct: 193 GAASFSNTSMDWTGTTSEMATASIVQDETIELPLS--PDDLQFAQVYRFIGDIFDPDSPC 250
Query: 93 --SGHLQTLKAMDPIDVETVLLLMRNLSMNLTSPNFAAHLSLLSSCN 137
HLQ LK+MD I V+T+LL++RNL NL SP F LLS+ +
Sbjct: 251 PVETHLQKLKSMDDIIVKTILLVLRNLEDNLLSPQFEPIRRLLSTYD 297
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.124 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,685,422
Number of extensions: 217024
Number of successful extensions: 576
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 574
Number of HSP's successfully gapped: 3
Length of query: 166
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 73
Effective length of database: 12,179,899
Effective search space: 889132627
Effective search space used: 889132627
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 152 (63.2 bits)