BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0665500 Os06g0665500|AK073262
         (491 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0665500  Amidase, hydantoinase/carbamoylase family protein   890   0.0  
Os12g0597500  Amidase, hydantoinase/carbamoylase family protein   170   2e-42

>Os06g0665500 Amidase, hydantoinase/carbamoylase family protein
          Length = 491

 Score =  890 bits (2301), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/479 (92%), Positives = 441/479 (92%)

Query: 1   MALLLSYPRRHPSIHXXXXXXXXXXXXXXXXXXXXXXXXXYREILRDETVLRLKELGKIS 60
           MALLLSYPRRHPSIH                         YREILRDETVLRLKELGKIS
Sbjct: 1   MALLLSYPRRHPSIHLLILSAYALFLLPILDGLELGGDGLYREILRDETVLRLKELGKIS 60

Query: 61  DGEGYLERTFLSPASIRASAVIISWMKDAGLTTWIDQMGNIHGRFEPTNSTKEALLIGSH 120
           DGEGYLERTFLSPASIRASAVIISWMKDAGLTTWIDQMGNIHGRFEPTNSTKEALLIGSH
Sbjct: 61  DGEGYLERTFLSPASIRASAVIISWMKDAGLTTWIDQMGNIHGRFEPTNSTKEALLIGSH 120

Query: 121 MDTVIDAGMYDGALGIISAISALKVLKVTGRLQRLTRPVEVIAFSDEEGVRFQTTFLGSA 180
           MDTVIDAGMYDGALGIISAISALKVLKVTGRLQRLTRPVEVIAFSDEEGVRFQTTFLGSA
Sbjct: 121 MDTVIDAGMYDGALGIISAISALKVLKVTGRLQRLTRPVEVIAFSDEEGVRFQTTFLGSA 180

Query: 181 AVAGTLPESILQVSDKSGTTVQDVLKLNSLEGTANALGEVRYSPESVGSYVEVHIEQGPV 240
           AVAGTLPESILQVSDKSGTTVQDVLKLNSLEGTANALGEVRYSPESVGSYVEVHIEQGPV
Sbjct: 181 AVAGTLPESILQVSDKSGTTVQDVLKLNSLEGTANALGEVRYSPESVGSYVEVHIEQGPV 240

Query: 241 LEALRYPLGVVKGIAGQTRLKVIINGSQGHAGTVPMKLRRDPMXXXXXXXXXXXXXCKEP 300
           LEALRYPLGVVKGIAGQTRLKVIINGSQGHAGTVPMKLRRDPM             CKEP
Sbjct: 241 LEALRYPLGVVKGIAGQTRLKVIINGSQGHAGTVPMKLRRDPMVAAAELVLTLETLCKEP 300

Query: 301 NKFLTYDEECGCFTEESLAGLVCTVGELLTWPSASNVIPGQVNFTVDIRAMDDKVRETIV 360
           NKFLTYDEECGCFTEESLAGLVCTVGELLTWPSASNVIPGQVNFTVDIRAMDDKVRETIV
Sbjct: 301 NKFLTYDEECGCFTEESLAGLVCTVGELLTWPSASNVIPGQVNFTVDIRAMDDKVRETIV 360

Query: 361 TSFSRLVLQRCDDRLVDCAVEQKHAAAATPCDAELTSRLERATRSTISSMAAGVRRAGGE 420
           TSFSRLVLQRCDDRLVDCAVEQKHAAAATPCDAELTSRLERATRSTISSMAAGVRRAGGE
Sbjct: 361 TSFSRLVLQRCDDRLVDCAVEQKHAAAATPCDAELTSRLERATRSTISSMAAGVRRAGGE 420

Query: 421 TPVLMSGAGHDAMAMARLTKVGMLFVRCRGGVSHSPEESVMDDDVWAAGLALVNFIDQN 479
           TPVLMSGAGHDAMAMARLTKVGMLFVRCRGGVSHSPEESVMDDDVWAAGLALVNFIDQN
Sbjct: 421 TPVLMSGAGHDAMAMARLTKVGMLFVRCRGGVSHSPEESVMDDDVWAAGLALVNFIDQN 479



>Os12g0597500 Amidase, hydantoinase/carbamoylase family protein
          Length = 418

 Score =  170 bits (430), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/402 (30%), Positives = 189/402 (47%), Gaps = 30/402 (7%)

Query: 66  LERTFLSPASIRASAVIISWMKDAGLTTWIDQMGNIHGRFEPTNSTKEALLIGSHMDTVI 125
           L R   S   ++A   I   M   GL+   D +GNI GR+E + +   A+  GSH+D + 
Sbjct: 28  LPRVLYSDKDVQARRYIKGIMNQLGLSIREDAVGNIFGRWEGSEAGLGAVATGSHVDAIP 87

Query: 126 DAGMYDGALGIISAISALKVLKVTGRLQRLTRPVEVIAFSDEEGVRFQTTFLGSAAVAGT 185
            +G YDG +G++ A+ A+++LK +G   +  R +EVI F+ EE  RF  + LGS  +AG+
Sbjct: 88  FSGKYDGVVGVLGALEAIRMLKRSGFQPK--RSLEVIMFTSEEPTRFGISCLGSRLMAGS 145

Query: 186 --LPESILQVSDKSGTTVQDVLKLNSLEGTANALGEVRYSPESVGSYVEVHIEQGPVLEA 243
             L  S+ +  D    +  D       +     L  V    +   ++VE+HIEQGP+LE 
Sbjct: 146 EELARSLKETVDNQNVSFFDAADSAGYKMHPEELHNVFLKKDDYFAFVELHIEQGPILEK 205

Query: 244 LRYPLGVVKGIAGQTRLKVIINGSQGHAGTVPMKLRRDPMXXXXXXXXXXXXXCKEPNKF 303
               +GVV  IA    +KV   G+ GHAG V M  R D                 E    
Sbjct: 206 EGIKIGVVTAIAAPASIKVEFEGNGGHAGAVLMPARNDAGLAAAELALAVEKHVLESGSI 265

Query: 304 LTYDEECGCFTEESLAGLVCTVGELLTWPSASNVIPGQVNFTVDIRAMDDKVRETIVTSF 363
            T                V TVG L   P A N IP + +  +D+R +D+K R  ++   
Sbjct: 266 DT----------------VGTVGILQLHPGAINSIPSKSHVEIDVRDIDEKRRNNVIEKV 309

Query: 364 SRLVLQRCDDRLVDCAVEQKHAAAATPCDAELTSRLERATRSTISSMAAGVRRAGGETPV 423
            +  ++   +R V  + E K      P  ++         +S IS+M    ++   E  +
Sbjct: 310 HQSAIEISKNRGVLLS-EFKIINQDPPALSD---------KSVISAMEFAAKQLNLEYKL 359

Query: 424 LMSGAGHDAMAMARLTKVGMLFVRCRGGVSHSPEESVMDDDV 465
           ++S A HD++ MAR++ +GM+F+ C  G SH PEE    +D+
Sbjct: 360 MISRAYHDSLFMARISPMGMIFIPCYKGYSHKPEEYASPEDM 401



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,388,297
Number of extensions: 558962
Number of successful extensions: 1500
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1496
Number of HSP's successfully gapped: 3
Length of query: 491
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 386
Effective length of database: 11,553,331
Effective search space: 4459585766
Effective search space used: 4459585766
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)