Os12g0597500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Amidase, hydantoinase/carbamoylase family protein.
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Os12g0597500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Amidase, hydantoinase/carbamoylase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.97 | 0.308 | 11 | -0.469 | 0.741 | 0.447 | 0.249 | -0.905 | 0.0782 | 3.47 | 20.6 | 345 | -- | -- |
| 45.39 | 0.314 | 11 | -0.284 | 0.778 | 0.511 | 0.49 | -- | 0.123 | 3.33 | 20.5 | 209 | -- | -- |
| 43.14 | 0.306 | 11 | -0.467 | 0.748 | 0.444 | -- | -0.929 | 0.0779 | 3.42 | 20.55 | 319 | -- | -- |
| 46.15 | 0.316 | 11 | -0.285 | 0.776 | 0.513 | -- | -- | 0.122 | 3.29 | 20.5 | 215 | -- | -- |
| 71.57 | 0.394 | 11 | -0.499 | -- | 0.464 | -- | -0.873 | 0.0747 | -- | 20.52 | 1113 | -- | -- |
| 54.99 | 0.348 | 10.9 | -0.129 | 0.685 | -- | 0.471 | -- | 0.225 | 3.42 | -- | -- | -- | -- |
| 55.68 | 0.349 | 10.9 | -0.137 | 0.686 | -- | -- | -- | 0.222 | 3.37 | -- | -- | -- | -- |
| 73.11 | 0.398 | 11 | -0.381 | -- | 0.737 | -- | -- | 0.0623 | -- | 19.5 | 1157 | -- | -- |
| 48.26 | 0.324 | 11 | -- | 0.766 | 0.449 | -- | -- | 0.161 | 3.31 | 20.5 | 211 | -- | -- |
| 82.19 | 0.424 | 10.9 | -0.108 | -- | -- | -- | -- | 0.24 | -- | -- | -- | -- | -- |
| 56.17 | 0.351 | 10.9 | -- | 0.683 | -- | -- | -- | 0.237 | 3.37 | -- | -- | -- | -- |
| 75.95 | 0.406 | 11 | -- | -- | 0.444 | -- | -- | 0.17 | -- | 20.51 | 1096 | -- | -- |
| 82.5 | 0.424 | 10.9 | -- | -- | -- | -- | -- | 0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.38 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 3 | 43.64 | temperature | 20 | 270 | < th | dose independent | rect. | 19 | 20 |
| 5 | 43.66 | temperature | 20 | 270 | > th | dose independent | rect. | 8 | 22 |
| 6 | 43.66 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 23 |
| 12 | 43.72 | temperature | 20 | 270 | < th | dose independent | rect. | 19 | 17 |
| 40 | 43.87 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 23 |
| 45 | 43.91 | humidity | 90 | 14400 | > th | dose dependent | sin | 4 | NA |
| 46 | 43.91 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 20 |
| 53 | 43.94 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 22 |
| 57 | 43.96 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 22 |
| 78 | 43.98 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 23 |
| 81 | 43.99 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 20 |
| 88 | 44.00 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 114 | 44.02 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 120 | 44.03 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 223 | 44.27 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 238 | 44.32 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 252 | 44.36 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 8 |
| 265 | 44.42 | temperature | 20 | 270 | < th | dose independent | rect. | 7 | 23 |
| 274 | 44.44 | temperature | 20 | 270 | < th | dose independent | rect. | 11 | 23 |
| 281 | 44.46 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 23 |
| 283 | 44.46 | humidity | 90 | 14400 | > th | dose dependent | sin | 15 | NA |
| 289 | 44.48 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 333 | 44.57 | temperature | 20 | 270 | < th | dose independent | sin | 9 | NA |
| 336 | 44.57 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 16 |
| 347 | 44.60 | humidity | 90 | 14400 | > th | dose independent | sin | 6 | NA |
| 362 | 44.63 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 8 |
| 369 | 44.64 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 12 |
| 377 | 44.66 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 23 |
| 387 | 44.67 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 19 |
| 398 | 44.68 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 16 |
| 413 | 44.70 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 22 |
| 542 | 44.87 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 566 | 44.89 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 572 | 44.89 | temperature | 20 | 10 | < th | dose independent | rect. | 14 | 23 |
| 574 | 44.90 | temperature | 20 | 270 | > th | dose independent | sin | 11 | NA |
| 593 | 44.92 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 597 | 44.93 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 601 | 44.93 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 22 |
| 614 | 44.95 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 14 |
| 625 | 44.96 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 627 | 44.96 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 17 |
| 646 | 44.97 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 659 | 44.99 | humidity | 90 | 14400 | > th | dose independent | sin | 13 | NA |
| 669 | 44.99 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 23 |
| 676 | 45.00 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 690 | 45.01 | humidity | 90 | 14400 | > th | dose independent | rect. | 24 | 23 |
| 692 | 45.01 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 720 | 45.04 | temperature | 20 | 10 | < th | dose independent | rect. | 7 | 23 |
| 736 | 45.06 | temperature | 20 | 10 | < th | dose independent | no | NA | NA |
| 737 | 45.06 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 18 |
| 741 | 45.06 | temperature | 20 | 10 | < th | dose independent | rect. | 9 | 23 |
| 742 | 45.06 | temperature | 20 | 10 | < th | dose independent | rect. | 11 | 23 |
| 757 | 45.08 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 782 | 45.10 | radiation | 30 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 789 | 45.10 | temperature | 20 | 10 | < th | dose independent | rect. | 3 | 23 |
| 791 | 45.11 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 807 | 45.12 | temperature | 20 | 10 | < th | dose independent | rect. | 5 | 23 |
| 811 | 45.13 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 823 | 45.14 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 827 | 45.14 | radiation | 30 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 836 | 45.14 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 844 | 45.15 | radiation | 30 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 874 | 45.18 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 920 | 45.21 | temperature | 20 | 10 | < th | dose independent | rect. | 1 | 23 |
| 996 | 45.30 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 1 |