BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0656300 Os06g0656300|AK060127
         (194 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0656300  Protein of unknown function DUF588 family protein   213   9e-56
Os02g0177700  Protein of unknown function DUF588 family protein   119   1e-27

>Os06g0656300 Protein of unknown function DUF588 family protein
          Length = 194

 Score =  213 bits (541), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 117/194 (60%), Positives = 117/194 (60%)

Query: 1   MSSYMXXXXXXXXXXXKTEXXXXXXXXXXXXXXXXXXXXNTQTETVLFIRKKATVKDVQX 60
           MSSYM           KTE                    NTQTETVLFIRKKATVKDVQ 
Sbjct: 1   MSSYMEAAAAARAAEAKTEGLLRGACALLAAAAALLVGLNTQTETVLFIRKKATVKDVQA 60

Query: 61  XXXXXXXXXXXXXXXXXXXXRCFYLSRFADGKPCRHRRAIAWLCFLLDKGCAYIXXXXXX 120
                               RCFYLSRFADGKPCRHRRAIAWLCFLLDKGCAYI      
Sbjct: 61  LWVLAMAAAAAAGYHLLQLLRCFYLSRFADGKPCRHRRAIAWLCFLLDKGCAYITFATTV 120

Query: 121 XXXXXXXXXLYGTHALQWTKLCNIYTRFCEQVAGSLVCAMLAAVGTALLSVVSARNLFRL 180
                    LYGTHALQWTKLCNIYTRFCEQVAGSLVCAMLAAVGTALLSVVSARNLFRL
Sbjct: 121 AAAQACVVALYGTHALQWTKLCNIYTRFCEQVAGSLVCAMLAAVGTALLSVVSARNLFRL 180

Query: 181 YXXXXXXXXXXFVG 194
           Y          FVG
Sbjct: 181 YPSMLSPPPSSFVG 194



>Os02g0177700 Protein of unknown function DUF588 family protein
          Length = 195

 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/142 (45%), Positives = 75/142 (52%), Gaps = 4/142 (2%)

Query: 40  NTQTETVLFIRKKATVKDVQXXXXXXXXXXXXXXXXXXXXXRCFYLSRFADGKPCRHRRA 99
           + +T+TVLF+RK A  KDVQ                     RC Y S   D        A
Sbjct: 38  SAETKTVLFVRKTAVAKDVQALWVLTVAAAAAAGYQFAQLVRCMYCSSSGDAGA----MA 93

Query: 100 IAWLCFLLDKGCAYIXXXXXXXXXXXXXXXLYGTHALQWTKLCNIYTRFCEQVAGSLVCA 159
           +AW  FLLDKGCAY+               L G  ALQW+KLCNIYTRFCEQ A  ++C+
Sbjct: 94  VAWTSFLLDKGCAYVVFASTAAALQACMVGLIGVEALQWSKLCNIYTRFCEQAAAGMLCS 153

Query: 160 MLAAVGTALLSVVSARNLFRLY 181
            LAA G A+LS  SAR LFRLY
Sbjct: 154 FLAAAGMAVLSAFSARRLFRLY 175



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.331    0.138    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,292,360
Number of extensions: 78340
Number of successful extensions: 182
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 2
Length of query: 194
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 99
Effective length of database: 12,075,471
Effective search space: 1195471629
Effective search space used: 1195471629
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 153 (63.5 bits)