BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0655500 Os06g0655500|AK069365
         (384 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0655500  Cyclin-like F-box domain containing protein         460   e-130
Os07g0153400  Cyclin-like F-box domain containing protein         130   2e-30

>Os06g0655500 Cyclin-like F-box domain containing protein
          Length = 384

 Score =  460 bits (1184), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/384 (65%), Positives = 251/384 (65%)

Query: 1   MSFSSSMSKQQXXXXXXXXXXXXXXXXXMELIPGLPEEVAEKCLLHLPFLYHRLFRTVSS 60
           MSFSSSMSKQQ                 MELIPGLPEEVAEKCLLHLPFLYHRLFRTVSS
Sbjct: 1   MSFSSSMSKQQVLEVAGDEVGGGGGEEVMELIPGLPEEVAEKCLLHLPFLYHRLFRTVSS 60

Query: 61  TWNRFLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRLQCQALDPFSRRWXXXXXXXX 120
           TWNRFLT                              RRLQCQALDPFSRRW        
Sbjct: 61  TWNRFLTVSPAKFPSAAAASVSLSLPFLFAFAFDPASRRLQCQALDPFSRRWLLLPPVPG 120

Query: 121 XXXXXXXXXXXXXPRRXXXXXXXXXXXXXDKXXXXXXXXXXXXNGWEEAAGMGTARGYMA 180
                        PRR             DK            NGWEEAAGMGTARGYMA
Sbjct: 121 GAAAAGSFAVVGLPRRGEIYVIGGVVEGGDKAVRSVAVYSAARNGWEEAAGMGTARGYMA 180

Query: 181 AGEVGGRLVVAGEDGEAEVFDPEEXXXXXXXXXXXXXXXXXXXXXXXXKLYVTEGWAWPF 240
           AGEVGGRLVVAGEDGEAEVFDPEE                        KLYVTEGWAWPF
Sbjct: 181 AGEVGGRLVVAGEDGEAEVFDPEEGRWAPAAARRGAAVARYDAAASGGKLYVTEGWAWPF 240

Query: 241 ERAPRGAVYDAASDSWSEMARGMREGWTGSCAVAGGRMYIVAEYGEWRLKRYDEPRDEWR 300
           ERAPRGAVYDAASDSWSEMARGMREGWTGSCAVAGGRMYIVAEYGEWRLKRYDEPRDEWR
Sbjct: 241 ERAPRGAVYDAASDSWSEMARGMREGWTGSCAVAGGRMYIVAEYGEWRLKRYDEPRDEWR 300

Query: 301 MVAGSGVPPEVRRPHXXXXXXXXXXXXXXXXIYVVGAGLDVAIGTVSPSPAIHGGDDERV 360
           MVAGSGVPPEVRRPH                IYVVGAGLDVAIGTVSPSPAIHGGDDERV
Sbjct: 301 MVAGSGVPPEVRRPHVVSGEVEEVGSGGRRRIYVVGAGLDVAIGTVSPSPAIHGGDDERV 360

Query: 361 DWEVVKGPAEFAGLAPCNAQVLYA 384
           DWEVVKGPAEFAGLAPCNAQVLYA
Sbjct: 361 DWEVVKGPAEFAGLAPCNAQVLYA 384



>Os07g0153400 Cyclin-like F-box domain containing protein
          Length = 406

 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/233 (36%), Positives = 104/233 (44%), Gaps = 23/233 (9%)

Query: 164 NGWEEAAGMGTARGYMAAGEVGGRLVVAG-------EDGEAEVFDPEEXXXXXXXXXXXX 216
           N W     M  AR + A G + GR+ VAG       E   AEV DP +            
Sbjct: 185 NRWTVMTRMLAARSFFAGGVIDGRVYVAGGYSTDQFELNSAEVLDPVKGVWQPVASMGMN 244

Query: 217 XXXXXXXXXXXXKLYVTEGWAWPFERAPRGAVYDAASDSWSEMARGMREGWTGSCAVAGG 276
                       +LYVTEG AWPF  +PRG VYD   D W  M  GMREGWTG   V   
Sbjct: 245 MASSDSAVISG-RLYVTEGCAWPFFSSPRGQVYDPKIDRWEVMPVGMREGWTGLSVVIDK 303

Query: 277 RMYIVAEYGEWRLKRYDEPRDEWRMVAGSGVPPEVRRPHXXXXXXXXXXXXXXXXIYVVG 336
            +++++EY   ++K YD   D W  V G  +P  + +P                 I VVG
Sbjct: 304 HLFVISEYERMKVKVYDPETDSWDSVKGPPMPERIMKPF--------SVSCLENKIVVVG 355

Query: 337 AGLDVAIGTVSPSPAIHGGDDER-----VDWEVVKGPAEFAGLAPCNAQVLYA 384
            GL VAIG V   P  H   D R     + W+ V  P EF  L P N+Q+LYA
Sbjct: 356 RGLHVAIGHVKKQPGSH--PDSRSSSYLIQWQDVDVPREFGDLTPSNSQILYA 406



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,032,249
Number of extensions: 362731
Number of successful extensions: 1113
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1103
Number of HSP's successfully gapped: 2
Length of query: 384
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 281
Effective length of database: 11,657,759
Effective search space: 3275830279
Effective search space used: 3275830279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)