BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0653200 Os06g0653200|AK058439
         (193 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0653200  Basic helix-loop-helix dimerisation region bHL...   337   2e-93
Os02g0178700  Helix-loop-helix DNA-binding domain containing...    88   4e-18

>Os06g0653200 Basic helix-loop-helix dimerisation region bHLH domain containing
           protein
          Length = 193

 Score =  337 bits (865), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 171/193 (88%), Positives = 171/193 (88%)

Query: 1   MGGPGASSTMSFEQAFLKNLLLSLQDCSTTKPLDAMSLHERKRAVKSSADFAMATARGGG 60
           MGGPGASSTMSFEQAFLKNLLLSLQDCSTTKPLDAMSLHERKRAVKSSADFAMATARGGG
Sbjct: 1   MGGPGASSTMSFEQAFLKNLLLSLQDCSTTKPLDAMSLHERKRAVKSSADFAMATARGGG 60

Query: 61  ARWPKAIVLQQQPASTTXXXXXXXXXXXXXXXXKTRSXXXXXXEMARRLQVRRRAMALRK 120
           ARWPKAIVLQQQPASTT                KTRS      EMARRLQVRRRAMALRK
Sbjct: 61  ARWPKAIVLQQQPASTTARARRCGRIVRRCCGRKTRSGAGGGGEMARRLQVRRRAMALRK 120

Query: 121 VIPGGGDAMDEAALLREAMDYVVHLRAQVDVLRRVSEAVQLQRRYTSSTSLRDYSWSKCA 180
           VIPGGGDAMDEAALLREAMDYVVHLRAQVDVLRRVSEAVQLQRRYTSSTSLRDYSWSKCA
Sbjct: 121 VIPGGGDAMDEAALLREAMDYVVHLRAQVDVLRRVSEAVQLQRRYTSSTSLRDYSWSKCA 180

Query: 181 LKGEEDSSMNMKR 193
           LKGEEDSSMNMKR
Sbjct: 181 LKGEEDSSMNMKR 193



>Os02g0178700 Helix-loop-helix DNA-binding domain containing protein
          Length = 210

 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/173 (44%), Positives = 92/173 (53%), Gaps = 24/173 (13%)

Query: 1   MGGPGASSTMSFEQAFLKNLLLSLQDCSTTKPLDAMS-LHERKRAVKSSADFAMATAR-- 57
           M GP  ++  +F+Q+FLKNLL SL+  S  K   AMS L ERKRA+KSSAD AMATAR  
Sbjct: 1   MRGPSTTTMATFKQSFLKNLLSSLKSSSKNK--AAMSTLSERKRAIKSSADIAMATARTG 58

Query: 58  -GGGARWPKAIV---------------LQQQPASTTXXXXXXXXXXXXXXXXKTR--SXX 99
             G ARWP AI+                   P +T                   R     
Sbjct: 59  IAGAARWPHAILASSSSSSSSSSSSSSSSSMPRTTFPCKMMQGKVRRRCKSIVRRRTPLM 118

Query: 100 XXXXEMARRLQVRRRAMALRKVIPGGGDAMDEAALLREAMDYVVHLRAQVDVL 152
               E+ARRL V++R   LR++IPGG    DE +LL EAMDYVVHL AQVDVL
Sbjct: 119 SSSSEVARRL-VKKRDKVLRRMIPGGELIADEISLLHEAMDYVVHLHAQVDVL 170



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.126    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,533,268
Number of extensions: 167034
Number of successful extensions: 643
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 644
Number of HSP's successfully gapped: 3
Length of query: 193
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 98
Effective length of database: 12,075,471
Effective search space: 1183396158
Effective search space used: 1183396158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)