Os02g0178700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Helix-loop-helix DNA-binding domain containing protein.
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Os02g0178700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Helix-loop-helix DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 137.56 | 0.551 | 2.9 | -0.0106 | 0.202 | 1.34 | 0.222 | -3.24 | 0.0717 | 2.46 | 0.1 | 75 | -- | -- |
| 140.01 | 0.551 | 2.88 | 0.063 | 0.204 | 0.966 | 0.0702 | -- | 0.0739 | 2.36 | 0.000256 | 73 | -- | -- |
| 137.72 | 0.547 | 2.9 | -0.0153 | 0.199 | 1.35 | -- | -3.1 | 0.0718 | 2.23 | 0.07211 | 74 | -- | -- |
| 140.02 | 0.551 | 2.88 | 0.0601 | 0.204 | 0.973 | -- | -- | 0.0711 | 2.45 | 0.04146 | 73 | -- | -- |
| 139.91 | 0.551 | 2.89 | -0.0212 | -- | 1.49 | -- | -3.14 | 0.0826 | -- | 0.09579 | 74 | -- | -- |
| 147.26 | 0.569 | 2.88 | 0.151 | 0.333 | -- | 0.365 | -- | 0.0281 | 3.58 | -- | -- | -- | -- |
| 147.66 | 0.569 | 2.89 | 0.145 | 0.334 | -- | -- | -- | 0.026 | 3.45 | -- | -- | -- | -- |
| 142.28 | 0.556 | 2.87 | 0.0543 | -- | 1.12 | -- | -- | 0.0821 | -- | 0.09925 | 73 | -- | -- |
| 140.11 | 0.551 | 2.88 | -- | 0.203 | 0.99 | -- | -- | 0.0654 | 2.43 | 0.09995 | 73 | -- | -- |
| 153.93 | 0.58 | 2.89 | 0.159 | -- | -- | -- | -- | 0.0349 | -- | -- | -- | -- | -- |
| 148.22 | 0.569 | 2.89 | -- | 0.337 | -- | -- | -- | 0.00984 | 3.44 | -- | -- | -- | -- |
| 142.35 | 0.556 | 2.88 | -- | -- | 1.13 | -- | -- | 0.0769 | -- | 0.01836 | 73 | -- | -- |
| 154.6 | 0.58 | 2.89 | -- | -- | -- | -- | -- | 0.0172 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 131.18 | wind | 1.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 5 | 133.87 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 8 | 134.27 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 12 | 135.01 | wind | 7.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 14 | 135.01 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 17 | 135.01 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 21 | 135.01 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 30 | 135.01 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 31 | 135.01 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 32 | 135.01 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 41 | 135.01 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 49 | 137.06 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 51 | 137.15 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 52 | 137.40 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 59 | 137.70 | temperature | 20.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 66 | 137.94 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 106 | 138.21 | humidity | 90.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 109 | 138.23 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 124 | 138.36 | humidity | 50.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 165 | 139.07 | temperature | 25.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 168 | 139.11 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 171 | 139.13 | wind | 1.0 | 10 | > th | dose independent | sin | 3 | NA |
| 173 | 139.19 | humidity | 70.0 | 720 | > th | dose independent | rect. | 18 | 8 |
| 176 | 139.24 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 22 |
| 195 | 139.41 | humidity | 70.0 | 720 | < th | dose independent | rect. | 18 | 2 |
| 227 | 139.54 | wind | 1.0 | 10 | < th | dose independent | rect. | 5 | 18 |
| 283 | 139.80 | wind | 1.0 | 90 | < th | dose dependent | rect. | 2 | 21 |
| 286 | 139.83 | temperature | 25.0 | 720 | > th | dose independent | rect. | 18 | 5 |
| 312 | 139.98 | temperature | 25.0 | 720 | > th | dose independent | rect. | 19 | 1 |
| 315 | 139.99 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 329 | 140.00 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 17 | 16 |
| 343 | 140.05 | wind | 5.0 | 90 | > th | dose independent | rect. | 2 | 1 |
| 346 | 140.05 | wind | 5.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 350 | 140.06 | humidity | 60.0 | 1440 | < th | dose independent | rect. | 17 | 16 |
| 358 | 140.09 | wind | 3.0 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 376 | 140.15 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 377 | 140.17 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 378 | 140.17 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 381 | 140.17 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 385 | 140.17 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 394 | 140.17 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 395 | 140.17 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 405 | 140.17 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 21 |
| 409 | 140.18 | wind | 1.0 | 90 | < th | dose dependent | sin | 8 | NA |
| 455 | 140.32 | humidity | 90.0 | 270 | > th | dose independent | rect. | 1 | 2 |
| 463 | 140.34 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 520 | 140.46 | wind | 1.0 | 10 | < th | dose independent | sin | 3 | NA |
| 550 | 140.48 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 552 | 140.48 | humidity | 70.0 | 1440 | < th | dose dependent | rect. | 17 | 16 |
| 553 | 140.49 | temperature | 25.0 | 10 | < th | dose independent | rect. | 4 | 2 |
| 569 | 140.52 | temperature | 25.0 | 720 | > th | dose dependent | sin | 12 | NA |
| 572 | 140.53 | humidity | 90.0 | 10 | > th | dose independent | rect. | 3 | 3 |
| 600 | 140.59 | temperature | 25.0 | 720 | < th | dose independent | rect. | 18 | 5 |
| 611 | 140.61 | wind | 1.0 | 720 | > th | dose independent | rect. | 17 | 6 |
| 614 | 140.61 | wind | 1.0 | 10 | > th | dose independent | rect. | 4 | 8 |
| 635 | 140.65 | wind | 1.0 | 90 | < th | dose independent | rect. | 21 | 8 |
| 641 | 140.67 | temperature | 25.0 | 720 | < th | dose independent | rect. | 17 | 7 |
| 648 | 140.69 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 674 | 140.73 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 2 |
| 692 | 140.74 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 2 |
| 696 | 140.75 | radiation | 1.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 698 | 140.75 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 1 |
| 699 | 140.75 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 706 | 140.77 | temperature | 10.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 709 | 140.77 | humidity | 50.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 713 | 140.77 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 718 | 140.77 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 23 |
| 719 | 140.77 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 745 | 140.79 | humidity | 60.0 | 1440 | < th | dose dependent | rect. | 16 | 18 |
| 750 | 140.80 | wind | 1.0 | 90 | > th | dose independent | rect. | 1 | 23 |
| 787 | 140.87 | wind | 9.0 | 90 | < th | dose independent | rect. | 5 | 23 |
| 816 | 140.90 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 837 | 140.92 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 925 | 140.99 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 945 | 141.03 | wind | 1.0 | 10 | > th | dose independent | rect. | 4 | 10 |
| 969 | 141.05 | wind | 1.0 | 90 | < th | dose dependent | no | NA | NA |
| 987 | 141.07 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 16 | 19 |