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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0653200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.46 (0.09) R2 : 0.674
β1 : -4.76 (0.41) R2dD : 0.224 R2D : 0.395
β2 : 1.04 (0.193) R2dC : 0.0207 R2C : 0.0139
β3 : -2.61 (0.318) R2dE : 0.0902 R2E : 0.308
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 3.44 (1.12) R2dD*E : 0.022 R2D*E : 0.168
γ1 : -1.11 (0.193) R2dN8 : 0.0458 R2N8 : 0.0529
σ : 1.39
deviance : 892.96
__
_____
C
peak time of C : 7.03
E
wheather : temperature
threshold : 21.14
memory length : 3725
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
880.96 1.39 4.47 -4.7 1.01 -2.64 -2.43 3.35 -1.14 7.62 20.9 3747 -- --
901.52 1.4 4.61 -5.24 0.955 -3.05 -2.46 -- -1.37 7.32 20.5 3802 -- --
892.96 1.39 4.46 -4.76 1.04 -2.61 -- 3.44 -1.11 7.03 21.14 3725 -- --
912.94 1.41 4.6 -5.4 1.04 -3.19 -- -- -1.3 6.86 20.65 3760 -- --
948.78 1.43 4.47 -4.65 -- -2.57 -- 3.77 -1.06 -- 21.14 3688 -- --
1104.47 1.56 4.81 -7.22 1.03 -- -2.53 -- -2.23 8.13 -- -- -- --
1121.73 1.57 4.81 -7.3 1.07 -- -- -- -2.23 7.45 -- -- -- --
968.66 1.45 4.63 -5.39 -- -3.2 -- -- -1.28 -- 20.68 3663 -- --
1015.88 1.48 4.31 -- 1.09 -6.38 -- -- 0.0337 7.08 17.9 47520 -- --
1182.91 1.61 4.84 -7.28 -- -- -- -- -2.22 -- -- -- -- --
2526.78 2.35 4.63 -- 1.01 -- -- -- -1.42 7.93 -- -- -- --
1075.87 1.53 4.35 -- -- -6.53 -- -- -0.0478 -- 17.44 47520 -- --
2582.67 2.37 4.66 -- -- -- -- -- -1.41 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 872.98 temperature 20 4320 > th dose independent rect. 21 1
2 875.91 temperature 20 4320 > th dose independent rect. 20 4
6 878.19 temperature 20 4320 < th dose independent rect. 21 3
10 879.20 atmosphere 995 43200 > th dose independent rect. 21 15
13 879.63 temperature 20 1440 < th dose dependent rect. 3 2
19 880.55 atmosphere 995 43200 < th dose independent rect. 21 15
26 881.35 temperature 20 4320 > th dose independent rect. 19 8
29 881.51 atmosphere 995 43200 < th dose independent sin 7 NA
34 882.07 atmosphere 995 43200 < th dose independent rect. 22 13
43 882.38 atmosphere 995 43200 < th dose dependent sin 10 NA
44 882.41 atmosphere 995 43200 > th dose independent sin 7 NA
52 883.23 temperature 20 4320 < th dose independent rect. 6 1
80 885.85 atmosphere 995 43200 < th dose dependent rect. 18 15
85 886.04 atmosphere 995 43200 < th dose dependent rect. 21 12
113 887.44 temperature 20 1440 < th dose independent rect. 21 10
119 888.11 temperature 20 4320 > th dose independent rect. 6 1
121 888.25 temperature 20 4320 > th dose independent rect. 19 12
122 888.35 atmosphere 995 43200 > th dose independent rect. 1 9
126 888.61 temperature 20 1440 > th dose independent rect. 21 10
128 888.63 atmosphere 995 43200 > th dose independent rect. 3 6
136 889.19 atmosphere 995 43200 < th dose independent rect. 24 10
151 889.51 atmosphere 995 43200 < th dose independent rect. 2 7
154 889.56 temperature 20 4320 < th dose independent rect. 19 12
195 891.20 atmosphere 995 43200 < th dose independent rect. 4 4
215 891.69 atmosphere 995 43200 > th dose independent rect. 5 3
247 893.39 temperature 20 4320 > th dose independent sin 11 NA
298 895.39 temperature 20 4320 < th dose independent sin 11 NA
303 895.52 atmosphere 995 43200 < th dose dependent rect. 3 5
348 897.21 atmosphere 995 43200 < th dose dependent rect. 12 20
429 899.95 temperature 30 1440 < th dose dependent rect. 3 3
437 900.42 temperature 15 1440 > th dose dependent rect. 3 3
455 901.21 temperature 20 1440 < th dose independent rect. 3 1
492 902.10 wind 1 14400 < th dose dependent rect. 22 6
511 902.59 radiation 10 1440 < th dose independent rect. 15 3
538 903.24 radiation 10 1440 < th dose independent rect. 15 15
593 904.67 radiation 10 1440 < th dose independent rect. 16 1
713 907.67 radiation 10 1440 < th dose independent rect. 15 12
719 907.87 radiation 10 1440 < th dose independent rect. 15 10
734 908.13 radiation 10 1440 < th dose independent rect. 15 8
751 908.39 temperature 25 4320 > th dose independent rect. 14 1
754 908.46 temperature 25 4320 > th dose independent rect. 12 3
755 908.47 temperature 25 4320 < th dose independent rect. 13 2
758 908.53 temperature 30 720 < th dose dependent rect. 22 13
855 910.19 temperature 15 720 > th dose dependent sin 7 NA
891 910.95 temperature 25 720 < th dose dependent sin 7 NA
916 911.46 temperature 25 720 < th dose dependent rect. 19 16
926 911.62 radiation 10 1440 < th dose independent rect. 11 19
955 912.18 radiation 10 1440 < th dose independent sin 15 NA