BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0653200 Os06g0653200|AK058439
         (193 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G57780.1  | chr5:23405505-23406008 REVERSE LENGTH=168           75   2e-14
AT4G30410.2  | chr4:14871309-14871851 REVERSE LENGTH=181           70   5e-13

>AT5G57780.1 | chr5:23405505-23406008 REVERSE LENGTH=168
          Length = 167

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 5/157 (3%)

Query: 13  EQAFLKNLLLSLQ--DCSTTKPLDAMSLHERKRAVKSSADFAMATARGGGARWPKAIVLQ 70
           +Q F+K  + +L   D S   PL+   + ERK A++ S+D AMA AR G   W +A++ +
Sbjct: 9   KQEFIKKWINTLHMLDSSIEHPLN---VTERKNAIRLSSDLAMAAARNGSTVWSRALISR 65

Query: 71  QQPASTTXXXXXXXXXXXXXXXXKTRSXXXXXXEMARRLQVRRRAMALRKVIPGGGDAMD 130
               +                     +          +  VR+R   L+ ++PGG    D
Sbjct: 66  SGNKTANKPMARRILKKARNRMKNRCNILRRNGNFTAKTWVRKRTDLLKSLVPGGELIDD 125

Query: 131 EAALLREAMDYVVHLRAQVDVLRRVSEAVQLQRRYTS 167
           +  L+RE +DY+V+LRAQVDV+R V+      R  T+
Sbjct: 126 KDYLIRETLDYIVYLRAQVDVMRTVAAVDLFTRNLTN 162



>AT4G30410.2 | chr4:14871309-14871851 REVERSE LENGTH=181
          Length = 180

 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 26/175 (14%)

Query: 9   TMSFEQAFLKNLLLSLQDCSTTKP-LDAMSLHERKRAVKSSADFAMATARGGGARWPKAI 67
           T S  + FLK   + LQ     +P +D  S+HERK+A+K SAD AMA+ R G   W +A+
Sbjct: 4   TSSMNEEFLKKWQMGLQ---IFRPSIDNTSVHERKKAIKLSADVAMASLRKGTTCWSRAL 60

Query: 68  VLQQQPASTTXXXXXXXXXXXXXXXXKT--------RSXXXXXXEMARRLQ--------- 110
           + +                       K         R       ++ RR           
Sbjct: 61  IEKTATEDNFLVRQMLSGIKAETLINKKLPKKTVCHRKIVRRSKKILRRKSKSASEEAAA 120

Query: 111 -----VRRRAMALRKVIPGGGDAMDEAALLREAMDYVVHLRAQVDVLRRVSEAVQ 160
                V+RR   LR V+PGG    ++  LL+E +DY+V L+ QV+V+R + +A +
Sbjct: 121 KAKRLVKRRTQGLRNVVPGGELMSNDVLLLQETLDYIVSLQTQVNVMRSIVDAAE 175



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.126    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,084,471
Number of extensions: 83677
Number of successful extensions: 315
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 2
Length of query: 193
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 100
Effective length of database: 8,556,881
Effective search space: 855688100
Effective search space used: 855688100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)