BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0646000 Os06g0646000|AK068674
         (345 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0646000  SAM (and some other nucleotide) binding motif ...   605   e-173
Os08g0411200  SAM (and some other nucleotide) binding motif ...   299   2e-81

>Os06g0646000 SAM (and some other nucleotide) binding motif domain containing
           protein
          Length = 345

 Score =  605 bits (1560), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 292/292 (100%), Positives = 292/292 (100%)

Query: 54  NKVPQSNNSEAEVFACPVCYEPLIRKGPSGINLPSIYRSGFKCSKCNKSFTSKDIFLDLT 113
           NKVPQSNNSEAEVFACPVCYEPLIRKGPSGINLPSIYRSGFKCSKCNKSFTSKDIFLDLT
Sbjct: 54  NKVPQSNNSEAEVFACPVCYEPLIRKGPSGINLPSIYRSGFKCSKCNKSFTSKDIFLDLT 113

Query: 114 VTSGTKEYSELKPARTELFRSPLVSFLYERGWRQNFNRSGFPGLDEEFQMAQDYFQSVAG 173
           VTSGTKEYSELKPARTELFRSPLVSFLYERGWRQNFNRSGFPGLDEEFQMAQDYFQSVAG
Sbjct: 114 VTSGTKEYSELKPARTELFRSPLVSFLYERGWRQNFNRSGFPGLDEEFQMAQDYFQSVAG 173

Query: 174 GVLLDVSCGSGLFTRKFAKSGSYSAVIALDFSENMLCQCYEFIQQDDTLVNTNLALVRAD 233
           GVLLDVSCGSGLFTRKFAKSGSYSAVIALDFSENMLCQCYEFIQQDDTLVNTNLALVRAD
Sbjct: 174 GVLLDVSCGSGLFTRKFAKSGSYSAVIALDFSENMLCQCYEFIQQDDTLVNTNLALVRAD 233

Query: 234 ISRLPFASSSIDAIHAGAAIHCWPSPSNAVAEISRVLRPGGVFVATTFLSSPRNNPFSVE 293
           ISRLPFASSSIDAIHAGAAIHCWPSPSNAVAEISRVLRPGGVFVATTFLSSPRNNPFSVE
Sbjct: 234 ISRLPFASSSIDAIHAGAAIHCWPSPSNAVAEISRVLRPGGVFVATTFLSSPRNNPFSVE 293

Query: 294 ALRPLRQIVGPVNTSYNYFTEGELEDLCKSCGLVNYSSKVQRSFIMFSGQKP 345
           ALRPLRQIVGPVNTSYNYFTEGELEDLCKSCGLVNYSSKVQRSFIMFSGQKP
Sbjct: 294 ALRPLRQIVGPVNTSYNYFTEGELEDLCKSCGLVNYSSKVQRSFIMFSGQKP 345



>Os08g0411200 SAM (and some other nucleotide) binding motif domain containing
           protein
          Length = 358

 Score =  299 bits (765), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 149/278 (53%), Positives = 191/278 (68%), Gaps = 3/278 (1%)

Query: 67  FACPVCYEPLIRKGPSGINLPSIYRSGFKCSKCNKSFTSKDIFLDLTVTSGTKEYSELKP 126
            ACP+CY PLI        + +   S  +CS C K + ++  + D+TV  G+ EYSE   
Sbjct: 82  LACPICYYPLISSSDQSAPVSAASSSSLECSTCKKFYPNRGDYWDMTVAVGSTEYSESTT 141

Query: 127 ARTELFRSPLVSFLYERGWRQNFNRSGFPGLDEEFQMAQDYFQSVAGGVLLDVSCGSGLF 186
             TE+FR+PLVSFLYERGWRQNF  SGFPGL+ EF+MAQ Y +   GG+++D SCGSGLF
Sbjct: 142 VTTEVFRTPLVSFLYERGWRQNFIWSGFPGLEREFEMAQTYLKPTTGGIIVDASCGSGLF 201

Query: 187 TRKFAKSGSYSAVIALDFSENMLCQCYEFIQQDDTLVNTNLALVRADISRLPFASSSIDA 246
           +R F KS  YS V+ALDFSENML QC E+++Q++ + +  LAL RADISRLPF S SIDA
Sbjct: 202 SRLFVKSELYSLVVALDFSENMLKQCNEYVKQEN-ISDKTLALARADISRLPFVSGSIDA 260

Query: 247 IHAGAAIHCWPSPSNAVAEISRVLRPGGVFVATTFLSSPRNNPFSVEALRPLRQIVGPVN 306
           +HA AAIHCWPSP+ AVAEISRVLRPGGVFVA+TF++     P +V  LR  R  +    
Sbjct: 261 VHAAAAIHCWPSPACAVAEISRVLRPGGVFVASTFVADIL--PPAVPVLRIGRPYISQFT 318

Query: 307 TSYNYFTEGELEDLCKSCGLVNYSSKVQRSFIMFSGQK 344
            S  + +E E EDLC++CGL+++       +IMFS  K
Sbjct: 319 GSNIFLSEAEFEDLCRACGLIDFKFVRNGFYIMFSATK 356



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,705,046
Number of extensions: 401549
Number of successful extensions: 1006
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1006
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 243
Effective length of database: 11,709,973
Effective search space: 2845523439
Effective search space used: 2845523439
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)