Os08g0411200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SAM (and some other nucleotide) binding motif domain containing protein.
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Os08g0411200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SAM (and some other nucleotide) binding motif domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.74 | 0.403 | 12.3 | -0.426 | 1.22 | -1.2 | 0.172 | 1.02 | -0.378 | 12.2 | 20.3 | 2037 | -- | -- |
| 76.07 | 0.406 | 12.3 | -0.519 | 1.21 | -1.35 | 0.13 | -- | -0.433 | 11.9 | 19.6 | 2667 | -- | -- |
| 73.87 | 0.4 | 12.3 | -0.425 | 1.22 | -1.21 | -- | 0.995 | -0.378 | 12.2 | 20.29 | 2031 | -- | -- |
| 74.93 | 0.403 | 12.3 | -0.573 | 1.21 | -1.35 | -- | -- | -0.442 | 12.1 | 19.4 | 2062 | -- | -- |
| 160.32 | 0.59 | 12.3 | -0.342 | -- | -1.49 | -- | 0.789 | -0.327 | -- | 20.24 | 2342 | -- | -- |
| 113.99 | 0.501 | 12.4 | -1.23 | 1.27 | -- | 0.12 | -- | -0.733 | 12.1 | -- | -- | -- | -- |
| 114.05 | 0.5 | 12.4 | -1.22 | 1.27 | -- | -- | -- | -0.733 | 12.1 | -- | -- | -- | -- |
| 160.5 | 0.59 | 12.3 | -0.448 | -- | -1.71 | -- | -- | -0.389 | -- | 19.7 | 2338 | -- | -- |
| 80.24 | 0.417 | 12.3 | -- | 1.24 | -1.71 | -- | -- | -0.298 | 12 | 19.7 | 2819 | -- | -- |
| 215.63 | 0.686 | 12.4 | -1.26 | -- | -- | -- | -- | -0.751 | -- | -- | -- | -- | -- |
| 153.56 | 0.58 | 12.4 | -- | 1.29 | -- | -- | -- | -0.596 | 12.2 | -- | -- | -- | -- |
| 164.27 | 0.597 | 12.3 | -- | -- | -1.93 | -- | -- | -0.291 | -- | 19.6 | 2343 | -- | -- |
| 257.82 | 0.749 | 12.4 | -- | -- | -- | -- | -- | -0.611 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 3 | 72.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 5 | 73.52 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 10 |
| 7 | 73.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 10 |
| 12 | 73.84 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 7 |
| 20 | 73.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 7 |
| 40 | 74.24 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 45 | 74.32 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 93 | 74.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 6 |
| 105 | 74.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 6 |
| 122 | 75.06 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 154 | 75.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 207 | 75.75 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 6 |
| 254 | 76.06 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 292 | 76.29 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 299 | 76.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 314 | 76.39 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 325 | 76.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 553 | 77.74 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 564 | 77.79 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 570 | 77.82 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 598 | 78.01 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 607 | 78.05 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 613 | 78.07 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 638 | 78.21 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 672 | 78.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 764 | 78.96 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 18 |
| 796 | 79.19 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 18 |