BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0411200 Os08g0411200|AK120890
(358 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G78140.1 | chr1:29401937-29403878 REVERSE LENGTH=356 318 3e-87
AT2G41040.1 | chr2:17121499-17123064 FORWARD LENGTH=353 263 1e-70
AT5G13710.1 | chr5:4424048-4426866 REVERSE LENGTH=337 55 8e-08
AT1G20330.1 | chr1:7038968-7040053 REVERSE LENGTH=362 52 5e-07
AT1G76090.1 | chr1:28550592-28551671 REVERSE LENGTH=360 51 9e-07
>AT1G78140.1 | chr1:29401937-29403878 REVERSE LENGTH=356
Length = 355
Score = 318 bits (814), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 161/293 (54%), Positives = 201/293 (68%), Gaps = 3/293 (1%)
Query: 69 VEREPAAENKLRKLACPICYYPLI-XXXXXXXXXXXXXXXXXXXXTCKKFYPNRGDYWDM 127
+E++ + + LACPICY L TCK+ Y + D+
Sbjct: 63 IEKKDKNRGEKKILACPICYNSLAWISQPNGLIESAASGIQVQCNTCKRSYSGNETHLDL 122
Query: 128 TVAXXXXXXXXXXXXXXXXFRTPLVSFLYERGWRQNFIWSGFPGLEREFEMAQTYLKPTT 187
VA FRTPLVSFLYERGWRQNFIW GFPG E+EFEMA+ YLKP
Sbjct: 123 AVASGSKRYSEPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPVL 182
Query: 188 GGIIVDASCGSGLFSRLFVKSELYSLVVALDFSENMLKQCNEYV-KQENISDK-TLALAR 245
GG I+DASCGSG+FSRLF +S+L+SLV+ALD+SENML+QC E + K+EN +K L L R
Sbjct: 183 GGNIIDASCGSGMFSRLFTRSDLFSLVIALDYSENMLRQCYELLNKEENFPNKEKLVLVR 242
Query: 246 ADISRLPFVSGSIDAVHAAAAIHCWPSPACAVAEISRVLRPGGVFVASTFVADILPPAVP 305
ADI+RLPF+SGS+DAVHA AA+HCWPSP+ AVAEISRVLRPGGVFVA+TF+ D +P
Sbjct: 243 ADIARLPFLSGSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFIYDGPFSFIP 302
Query: 306 VLRIGRPYISQFTGSNIFLSEAEFEDLCRACGLIDFKFVRNGFYIMFSATKAS 358
L+ R I +++GS+IFL+E E ED+C+ACGL++F VRNG +IM SATK S
Sbjct: 303 FLKNLRQEIMRYSGSHIFLNERELEDICKACGLVNFTRVRNGPFIMLSATKPS 355
>AT2G41040.1 | chr2:17121499-17123064 FORWARD LENGTH=353
Length = 352
Score = 263 bits (672), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 140/318 (44%), Positives = 188/318 (59%), Gaps = 9/318 (2%)
Query: 44 RSALRASVTPEFVTAAPDEAVEESSVEREPAAENKLRK---LACPICYYPLIXXXXXXXX 100
R + SV F +AA +S + + + ++ + ACP+CY PL+
Sbjct: 38 RFSASTSVRSRFPSAAISAVAPKSDINKNETPKIEIEETQVFACPVCYEPLMRKGPSGIN 97
Query: 101 XXXXXXXXXXXXTCKKFYPNRGDYWDMTVAXXXXXXXXXXXXXXXXFRTPLVSFLYERGW 160
C K Y ++ +Y D+TV FR+PLVSFLYERGW
Sbjct: 98 LQAIYRSGFKCGQCNKTYSSKDEYLDLTVTADLDDYNEVKPITTELFRSPLVSFLYERGW 157
Query: 161 RQNFIWSGFPGLEREFEMAQTYLKPTTGGIIVDASCGSGLFSRLFVKSELYSLVVALDFS 220
RQ F SGFPG + EF MA+ Y K GG++VD SCGSGLFSR F +S YS V+ALD+S
Sbjct: 158 RQAFKRSGFPGPDEEFRMAEEYFKEAEGGLLVDVSCGSGLFSRKFAQSGKYSGVIALDYS 217
Query: 221 ENMLKQCNEYVKQENISDKT--LALARADISRLPFVSGSIDAVHAAAAIHCWPSPACAVA 278
ENML+QC E++K +N D + +A+ RAD+SRLPF SGS+DAVHA AA+HCWPSP A+A
Sbjct: 218 ENMLRQCKEFIKNDNTFDNSTNIAVVRADVSRLPFPSGSVDAVHAGAALHCWPSPTNAIA 277
Query: 279 EISRVLRPGGVFVASTFVADILPPAVPVLRIGRPYISQFTGSNIFLSEAEFEDLCRACGL 338
EI RVLR GGVFV +TF+ P+ P I RP+ S+ S +L + E +D+C +CGL
Sbjct: 278 EICRVLRSGGVFVGTTFLR--YSPSTPW--IIRPFQSRILQSYNYLMQDEIKDVCTSCGL 333
Query: 339 IDFKFVRNGFYIMFSATK 356
D++ +IMF+A K
Sbjct: 334 TDYEDYIQDSFIMFTARK 351
>AT5G13710.1 | chr5:4424048-4426866 REVERSE LENGTH=337
Length = 336
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 68/160 (42%), Gaps = 10/160 (6%)
Query: 151 LVSFLYERGWRQNFI----WSG---FPGLEREFEMAQTYLKPTTGGIIVDASCGSGLFSR 203
L + YE GW ++F W G ++R L G ++D CG G R
Sbjct: 51 LATSFYEYGWGESFHFAQRWKGESLRESIKRHEHFLALQLGIQPGQKVLDVGCGIGGPLR 110
Query: 204 LFVKSELYSLVVALDFSENMLKQCNEYVKQENISDKTLALARADISRLPFVSGSIDAVHA 263
+ S+V L+ +E + + E + + DKT +AD ++PF S DAV+A
Sbjct: 111 EIARFS-NSVVTGLNNNEYQITRGKELNRLAGV-DKTCNFVKADFMKMPFPENSFDAVYA 168
Query: 264 AAAIHCWPSPACAVAEISRVLRPGGVFVASTF-VADILPP 302
A P EI RVL+PG F A + + D P
Sbjct: 169 IEATCHAPDAYGCYKEIYRVLKPGQCFAAYEWCMTDAFDP 208
>AT1G20330.1 | chr1:7038968-7040053 REVERSE LENGTH=362
Length = 361
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Query: 151 LVSFLYERGWRQNFIWS-GFPGLEREF------EMAQTYLKPTTGGIIVDASCGSGLFSR 203
LV+ +YE GW Q+F +S PG + EMA ++ G I+D CG G R
Sbjct: 80 LVTDIYEWGWGQSFHFSPSIPGKSHKDATRLHEEMAVDLIQVKPGQKILDVGCGVGGPMR 139
Query: 204 LFVKSELYSLVVALDFSENMLKQCNEYVKQENISDKTLALARADISRLPFVSGSIDAVHA 263
+ S + VV + +E + + + K+ + D + + ++PF S D ++
Sbjct: 140 A-IASHSRANVVGITINEYQVNRARLHNKKAGL-DALCEVVCGNFLQMPFDDNSFDGAYS 197
Query: 264 AAAIHCWPSPACAVAEISRVLRPGGVFVASTFV 296
A P AEI RVL+PG ++V+ +V
Sbjct: 198 IEATCHAPKLEEVYAEIYRVLKPGSMYVSYEWV 230
>AT1G76090.1 | chr1:28550592-28551671 REVERSE LENGTH=360
Length = 359
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 9/153 (5%)
Query: 151 LVSFLYERGWRQNFIWS-GFPGLEREF------EMAQTYLKPTTGGIIVDASCGSGLFSR 203
LV+ +YE GW Q+F +S PG + EMA +K G I+DA CG G R
Sbjct: 80 LVTDIYEWGWGQSFHFSPHVPGKSDKDATRIHEEMAVDLIKVKPGQKILDAGCGVGGPMR 139
Query: 204 LFVKSELYSLVVALDFSENMLKQCNEYVKQENISDKTLALARADISRLPFVSGSIDAVHA 263
+ + + V + +E +++ + K+ + D + + ++PF + D ++
Sbjct: 140 A-IAAHSKAQVTGITINEYQVQRAKLHNKKAGL-DSLCNVVCGNFLKMPFDENTFDGAYS 197
Query: 264 AAAIHCWPSPACAVAEISRVLRPGGVFVASTFV 296
A P +EI RV++PG +FV+ +V
Sbjct: 198 IEATCHAPKLEEVYSEIFRVMKPGSLFVSYEWV 230
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.137 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,542,821
Number of extensions: 230494
Number of successful extensions: 737
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 737
Number of HSP's successfully gapped: 5
Length of query: 358
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 258
Effective length of database: 8,364,969
Effective search space: 2158162002
Effective search space used: 2158162002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 112 (47.8 bits)