Os06g0646000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SAM (and some other nucleotide) binding motif domain containing protein.
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Os06g0646000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SAM (and some other nucleotide) binding motif domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.83 | 0.307 | 13.5 | 0.339 | 0.628 | -0.684 | 0.632 | 0.62 | -0.0697 | 10.5 | 20.25 | 1710 | -- | -- |
| 43.28 | 0.306 | 13.6 | 0.345 | 0.627 | -0.84 | 0.661 | -- | -0.0648 | 10.4 | 19.64 | 3017 | -- | -- |
| 44.45 | 0.311 | 13.5 | 0.36 | 0.626 | -0.702 | -- | 0.592 | -0.0687 | 10.5 | 20.24 | 1671 | -- | -- |
| 45.02 | 0.312 | 13.5 | 0.395 | 0.613 | -0.886 | -- | -- | -0.0572 | 10.3 | 19.4 | 3027 | -- | -- |
| 66.71 | 0.38 | 13.5 | 0.445 | -- | -0.781 | -- | 0.561 | -0.0208 | -- | 20.2 | 2204 | -- | -- |
| 55.42 | 0.349 | 13.6 | -0.0935 | 0.627 | -- | 0.699 | -- | -0.26 | 10.5 | -- | -- | -- | -- |
| 57.42 | 0.355 | 13.6 | -0.0654 | 0.624 | -- | -- | -- | -0.258 | 10.5 | -- | -- | -- | -- |
| 66.96 | 0.381 | 13.6 | 0.321 | -- | -0.828 | -- | -- | -0.0675 | -- | 20.2 | 2219 | -- | -- |
| 46.54 | 0.318 | 13.6 | -- | 0.627 | -0.665 | -- | -- | -0.135 | 10.4 | 20.2 | 1621 | -- | -- |
| 81.29 | 0.421 | 13.6 | -0.0763 | -- | -- | -- | -- | -0.26 | -- | -- | -- | -- | -- |
| 57.54 | 0.355 | 13.6 | -- | 0.624 | -- | -- | -- | -0.25 | 10.5 | -- | -- | -- | -- |
| 66.8 | 0.381 | 13.6 | -- | -- | -0.585 | -- | -- | -0.0622 | -- | 25.26 | 859 | -- | -- |
| 81.45 | 0.421 | 13.6 | -- | -- | -- | -- | -- | -0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.16 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 3 | 41.36 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 6 | 42.09 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 7 |
| 7 | 42.11 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 7 |
| 66 | 42.64 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 71 | 42.68 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 76 | 42.69 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 80 | 42.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 6 |
| 87 | 42.74 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 6 |
| 90 | 42.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 116 | 42.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 132 | 42.93 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 142 | 42.96 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 17 |
| 161 | 43.02 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 208 | 43.13 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 305 | 43.37 | wind | 1 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 326 | 43.42 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 8 |
| 327 | 43.42 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 8 |
| 477 | 43.73 | temperature | 20 | 4320 | > th | dose independent | rect. | 11 | 15 |
| 482 | 43.74 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 497 | 43.77 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 624 | 43.96 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 20 |
| 648 | 44.01 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 20 |
| 653 | 44.02 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 690 | 44.10 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 750 | 44.23 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 19 |
| 765 | 44.26 | temperature | 20 | 90 | < th | dose independent | rect. | 12 | 22 |
| 812 | 44.36 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 817 | 44.36 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 21 |
| 848 | 44.39 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 21 |
| 862 | 44.41 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 908 | 44.47 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 12 |
| 914 | 44.48 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 17 |
| 984 | 44.56 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 996 | 44.57 | temperature | 10 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 997 | 44.58 | temperature | 10 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 999 | 44.58 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 5 |