BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0646000 Os06g0646000|AK068674
(345 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G41040.1 | chr2:17121499-17123064 FORWARD LENGTH=353 400 e-112
AT1G78140.1 | chr1:29401937-29403878 REVERSE LENGTH=356 310 6e-85
AT1G20330.1 | chr1:7038968-7040053 REVERSE LENGTH=362 58 6e-09
AT5G13710.1 | chr5:4424048-4426866 REVERSE LENGTH=337 57 2e-08
>AT2G41040.1 | chr2:17121499-17123064 FORWARD LENGTH=353
Length = 352
Score = 400 bits (1028), Expect = e-112, Method: Compositional matrix adjust.
Identities = 188/293 (64%), Positives = 234/293 (79%), Gaps = 7/293 (2%)
Query: 54 NKVPQSNNSEAEVFACPVCYEPLIRKGPSGINLPSIYRSGFKCSKCNKSFTSKDIFLDLT 113
N+ P+ E +VFACPVCYEPL+RKGPSGINL +IYRSGFKC +CNK+++SKD +LDLT
Sbjct: 66 NETPKIEIEETQVFACPVCYEPLMRKGPSGINLQAIYRSGFKCGQCNKTYSSKDEYLDLT 125
Query: 114 VTSGTKEYSELKPARTELFRSPLVSFLYERGWRQNFNRSGFPGLDEEFQMAQDYFQSVAG 173
VT+ +Y+E+KP TELFRSPLVSFLYERGWRQ F RSGFPG DEEF+MA++YF+ G
Sbjct: 126 VTADLDDYNEVKPITTELFRSPLVSFLYERGWRQAFKRSGFPGPDEEFRMAEEYFKEAEG 185
Query: 174 GVLLDVSCGSGLFTRKFAKSGSYSAVIALDFSENMLCQCYEFIQQDDTLVN-TNLALVRA 232
G+L+DVSCGSGLF+RKFA+SG YS VIALD+SENML QC EFI+ D+T N TN+A+VRA
Sbjct: 186 GLLVDVSCGSGLFSRKFAQSGKYSGVIALDYSENMLRQCKEFIKNDNTFDNSTNIAVVRA 245
Query: 233 DISRLPFASSSIDAIHAGAAIHCWPSPSNAVAEISRVLRPGGVFVATTFLSSPRNNPFSV 292
D+SRLPF S S+DA+HAGAA+HCWPSP+NA+AEI RVLR GGVFV TTFL R +P +
Sbjct: 246 DVSRLPFPSGSVDAVHAGAALHCWPSPTNAIAEICRVLRSGGVFVGTTFL---RYSPSTP 302
Query: 293 EALRPLRQIVGPVNTSYNYFTEGELEDLCKSCGLVNYSSKVQRSFIMFSGQKP 345
+RP + + SYNY + E++D+C SCGL +Y +Q SFIMF+ +KP
Sbjct: 303 WIIRPFQ---SRILQSYNYLMQDEIKDVCTSCGLTDYEDYIQDSFIMFTARKP 352
>AT1G78140.1 | chr1:29401937-29403878 REVERSE LENGTH=356
Length = 355
Score = 310 bits (794), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 155/289 (53%), Positives = 202/289 (69%), Gaps = 6/289 (2%)
Query: 60 NNSEAEVFACPVCYEPLIR-KGPSGINLPSIYRSGFKCSKCNKSFTSKDIFLDLTVTSGT 118
N E ++ ACP+CY L P+G+ + +C+ C +S++ + LDL V SG+
Sbjct: 69 NRGEKKILACPICYNSLAWISQPNGLIESAASGIQVQCNTCKRSYSGNETHLDLAVASGS 128
Query: 119 KEYSELKPARTELFRSPLVSFLYERGWRQNFNRSGFPGLDEEFQMAQDYFQSVAGGVLLD 178
K YSE P TELFR+PLVSFLYERGWRQNF GFPG ++EF+MA+ Y + V GG ++D
Sbjct: 129 KRYSEPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPVLGGNIID 188
Query: 179 VSCGSGLFTRKFAKSGSYSAVIALDFSENMLCQCYEFIQQDDTLVNT-NLALVRADISRL 237
SCGSG+F+R F +S +S VIALD+SENML QCYE + +++ N L LVRADI+RL
Sbjct: 189 ASCGSGMFSRLFTRSDLFSLVIALDYSENMLRQCYELLNKEENFPNKEKLVLVRADIARL 248
Query: 238 PFASSSIDAIHAGAAIHCWPSPSNAVAEISRVLRPGGVFVATTFLSSPRNNPFS-VEALR 296
PF S S+DA+HAGAA+HCWPSPS+AVAEISRVLRPGGVFVATTF+ + PFS + L+
Sbjct: 249 PFLSGSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFI---YDGPFSFIPFLK 305
Query: 297 PLRQIVGPVNTSYNYFTEGELEDLCKSCGLVNYSSKVQRSFIMFSGQKP 345
LRQ + + S+ + E ELED+CK+CGLVN++ FIM S KP
Sbjct: 306 NLRQEIMRYSGSHIFLNERELEDICKACGLVNFTRVRNGPFIMLSATKP 354
>AT1G20330.1 | chr1:7038968-7040053 REVERSE LENGTH=362
Length = 361
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 31/226 (13%)
Query: 75 PLIRKGPSGINLPSIYRSGFKCSKCNKSFTS-----KDIFLDLTVTSGTKEYSELKPART 129
P RKG ++L S K K + S K+I E +E P
Sbjct: 26 PAERKGKRAVDLSGGSISAEKVQDNYKQYWSFFRRPKEI-----------ETAEKVPDFV 74
Query: 130 ELFRSPLVSFLYERGWRQNFNRS-GFPG--------LDEEFQMAQDYFQSVAGGVLLDVS 180
+ F + LV+ +YE GW Q+F+ S PG L EE MA D Q G +LDV
Sbjct: 75 DTFYN-LVTDIYEWGWGQSFHFSPSIPGKSHKDATRLHEE--MAVDLIQVKPGQKILDVG 131
Query: 181 CGSGLFTRKFAKSGSYSAVIALDFSENMLCQCYEFIQQDDTLVNTNLALVRADISRLPFA 240
CG G R A S S + V+ + +E + + + ++ +V + ++PF
Sbjct: 132 CGVGGPMRAIA-SHSRANVVGITINEYQVNRAR--LHNKKAGLDALCEVVCGNFLQMPFD 188
Query: 241 SSSIDAIHAGAAIHCWPSPSNAVAEISRVLRPGGVFVATTFLSSPR 286
+S D ++ A P AEI RVL+PG ++V+ ++++ +
Sbjct: 189 DNSFDGAYSIEATCHAPKLEEVYAEIYRVLKPGSMYVSYEWVTTEK 234
>AT5G13710.1 | chr5:4424048-4426866 REVERSE LENGTH=337
Length = 336
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 12/166 (7%)
Query: 136 LVSFLYERGWRQNFN---RSGFPGLDEEFQMAQDYFQSVAGGV-----LLDVSCGSGLFT 187
L + YE GW ++F+ R L E + ++F ++ G+ +LDV CG G
Sbjct: 51 LATSFYEYGWGESFHFAQRWKGESLRESIKR-HEHFLALQLGIQPGQKVLDVGCGIGGPL 109
Query: 188 RKFAKSGSYSAVIALDFSENMLCQCYEFIQQDDTLVNTNLALVRADISRLPFASSSIDAI 247
R+ A+ S S V L+ +E + + E + V+ V+AD ++PF +S DA+
Sbjct: 110 REIARF-SNSVVTGLNNNEYQITRGKELNRL--AGVDKTCNFVKADFMKMPFPENSFDAV 166
Query: 248 HAGAAIHCWPSPSNAVAEISRVLRPGGVFVATTFLSSPRNNPFSVE 293
+A A P EI RVL+PG F A + + +P + E
Sbjct: 167 YAIEATCHAPDAYGCYKEIYRVLKPGQCFAAYEWCMTDAFDPDNAE 212
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,420,276
Number of extensions: 271120
Number of successful extensions: 760
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 761
Number of HSP's successfully gapped: 4
Length of query: 345
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 246
Effective length of database: 8,392,385
Effective search space: 2064526710
Effective search space used: 2064526710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)