BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0639200 Os06g0639200|J090089I15
         (140 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0639200  Pathogenesis-related transcriptional factor an...   287   2e-78
Os03g0818800  Similar to Floral homeotic protein                   74   4e-14

>Os06g0639200 Pathogenesis-related transcriptional factor and ERF domain
           containing protein
          Length = 140

 Score =  287 bits (734), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 140/140 (100%), Positives = 140/140 (100%)

Query: 1   MAATFYGVGSIALAMHEDDEEEGSGRVFGFAAGDLVRPAVVTQQLFPMTAAAAAVVPEST 60
           MAATFYGVGSIALAMHEDDEEEGSGRVFGFAAGDLVRPAVVTQQLFPMTAAAAAVVPEST
Sbjct: 1   MAATFYGVGSIALAMHEDDEEEGSGRVFGFAAGDLVRPAVVTQQLFPMTAAAAAVVPEST 60

Query: 61  EQRHVAAAAEQWARPPSRKTRRGPRSRSSQYRGVTFYRRTGRWESHIWSVHLLSSSCIYT 120
           EQRHVAAAAEQWARPPSRKTRRGPRSRSSQYRGVTFYRRTGRWESHIWSVHLLSSSCIYT
Sbjct: 61  EQRHVAAAAEQWARPPSRKTRRGPRSRSSQYRGVTFYRRTGRWESHIWSVHLLSSSCIYT 120

Query: 121 CAYLRTFALLSYTWQLYSVK 140
           CAYLRTFALLSYTWQLYSVK
Sbjct: 121 CAYLRTFALLSYTWQLYSVK 140



>Os03g0818800 Similar to Floral homeotic protein
          Length = 446

 Score = 73.6 bits (179), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 57/95 (60%), Gaps = 8/95 (8%)

Query: 17  EDDEEEGSGRVFGFAAGDLVRPAVVTQQLFPMTAAAAAVVPESTEQRHVAAAAEQWARPP 76
           +DDE  G       A+G      +VT+QL P    AA     + +    AA     A+ P
Sbjct: 49  DDDECSGEQHQLPAASG------IVTRQLLPPPPPAAPSPAPAWQPPRRAAEDAALAQRP 102

Query: 77  --SRKTRRGPRSRSSQYRGVTFYRRTGRWESHIWS 109
             ++KTRRGPRSRSSQYRGVTFYRRTGRWESHIW+
Sbjct: 103 VVAKKTRRGPRSRSSQYRGVTFYRRTGRWESHIWA 137



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.130    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,485,633
Number of extensions: 234039
Number of successful extensions: 1118
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1117
Number of HSP's successfully gapped: 4
Length of query: 140
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 49
Effective length of database: 12,284,327
Effective search space: 601932023
Effective search space used: 601932023
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 150 (62.4 bits)