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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0639200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : -2930 (--) R2 : 0.18
β1 : 6990 (--) R2dD : 6790000 R2D : -2.7e+07
β2 : -- (--) R2dC : -- R2C : --
β3 : -1350000 (--) R2dE : 9.29e+09 R2E : -9.31e+09
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 3220000 (--) R2dD*E : 9.28e+09 R2D*E : -9.26e+09
γ1 : -0.144 (--) R2dN8 : 0.011 R2N8 : -20200000
σ : 0.592
deviance : 161.31
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 0.9385
memory length : 11
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.01
open length of G : 0.93

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
158.19 0.586 -2930 6990 0.228 -1350000 0.0844 3220000 -0.144 9.87 0.943 11 8 0.92
1478127179127.98 56600 -2630 6990 0.743 -1220000 -0.133 -- -1.21 10.9 1 14 8 1.26
158.22 0.586 -2930 6990 0.228 -1350000 -- 3220000 -0.144 9.83 0.9366 11 8 0.924
1197467882685.6 51000 -2360 6990 0.744 -1100000 -- -- -1.21 10.9 1 14 8.01 1.26
161.31 0.592 -2930 6990 -- -1350000 -- 3220000 -0.144 -- 0.9385 11 8.01 0.93
190.09 0.646 2.81 -0.0466 0.274 -- 0.366 -- -0.152 9.36 -- -- -- --
190.57 0.646 2.8 -0.0329 0.272 -- -- -- -0.152 9.47 -- -- -- --
970090041736.53 45900 -2130 6990 -- -987000 -- -- -1.21 -- 1 14 8.01 1.26
974547311271.93 46000 -2130 -- 0.745 -987000 -- -- -1.21 10.9 1 14 8.01 1.26
194.9 0.652 2.81 -0.0347 -- -- -- -- -0.151 -- -- -- -- --
190.6 0.646 2.8 -- 0.272 -- -- -- -0.148 9.48 -- -- -- --
789754361810.51 41400 -1920 -- -- -889000 -- -- -0.122 -- 0.2596 18 7.7 1.31
194.94 0.652 2.81 -- -- -- -- -- -0.147 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 160.77 wind 1.0 10 < th dose independent rect. 8 1
3 160.77 wind 1.0 10 < th dose dependent rect. 8 1
6 167.78 wind 1.0 90 < th dose independent rect. 6 1
7 168.39 atmosphere 1005.0 10 > th dose dependent rect. 7 2
28 174.23 radiation 10.0 10 > th dose independent sin 10 NA
29 174.68 humidity 90.0 90 > th dose dependent rect. 6 1
33 175.13 radiation 10.0 10 > th dose independent rect. 17 16
41 175.94 wind 1.0 270 < th dose dependent rect. 4 1
42 175.96 radiation 20.0 90 < th dose independent rect. 7 2
48 176.27 radiation 10.0 10 > th dose independent rect. 7 2
66 176.49 radiation 40.0 10 < th dose independent rect. 7 3
67 176.65 atmosphere 1005.0 30 > th dose independent rect. 7 2
74 177.07 radiation 10.0 10 < th dose independent sin 10 NA
75 177.09 radiation 20.0 10 < th dose independent rect. 7 3
76 177.19 temperature 20.0 90 > th dose independent rect. 7 2
133 178.30 wind 1.0 270 < th dose independent rect. 4 1
134 178.42 radiation 1.0 90 > th dose independent rect. 7 2
154 178.53 temperature 25.0 90 < th dose independent rect. 7 2
163 178.71 temperature 25.0 10 < th dose independent rect. 7 1
175 178.76 radiation 40.0 90 < th dose dependent rect. 7 2
180 178.85 radiation 40.0 10 < th dose dependent rect. 7 3
188 179.02 humidity 80.0 10 > th dose independent rect. 8 1
197 179.19 temperature 30.0 90 < th dose dependent rect. 7 2
218 179.56 humidity 90.0 90 > th dose independent rect. 6 2
235 179.81 temperature 15.0 1440 > th dose independent rect. 8 3
249 180.02 wind 9.0 90 < th dose dependent rect. 7 2
261 180.17 precipitation 0.1 90 < th dose independent rect. 7 2
262 180.17 precipitation 0.1 90 < th dose dependent rect. 7 2
274 180.30 wind 7.0 90 < th dose independent rect. 7 2
277 180.32 temperature 10.0 90 > th dose independent rect. 7 2
279 180.32 humidity 50.0 90 > th dose independent rect. 7 2
280 180.32 atmosphere 995.0 90 > th dose independent rect. 7 2
281 180.32 atmosphere 1015.0 90 < th dose independent rect. 7 2
282 180.32 temperature 10.0 90 > th dose independent rect. 9 22
316 180.60 humidity 50.0 90 > th dose dependent rect. 7 2
317 180.61 radiation 20.0 10 < th dose independent rect. 7 7
319 180.63 wind 9.0 90 < th dose independent rect. 9 22
323 180.67 radiation 40.0 10 < th dose independent rect. 18 16
333 180.76 humidity 60.0 10 > th dose independent rect. 7 3
336 180.77 temperature 20.0 270 < th dose independent rect. 3 4
338 180.79 humidity 60.0 1440 < th dose independent rect. 15 1
342 180.81 radiation 20.0 10 < th dose independent rect. 7 21
345 180.81 temperature 20.0 270 < th dose dependent rect. 3 8
350 180.85 humidity 90.0 90 > th dose dependent rect. 6 6
382 181.04 humidity 60.0 1440 > th dose independent rect. 15 2
385 181.05 humidity 60.0 1440 < th dose independent rect. 14 3
403 181.16 humidity 70.0 1440 < th dose dependent rect. 15 2
405 181.17 wind 1.0 90 > th dose independent rect. 7 2
406 181.19 wind 7.0 10 < th dose independent rect. 7 3
431 181.32 humidity 90.0 90 > th dose independent rect. 6 6
462 181.37 temperature 20.0 270 < th dose independent rect. 3 9
466 181.39 precipitation 0.1 10 < th dose independent rect. 7 3
467 181.39 precipitation 0.1 10 < th dose dependent rect. 7 3
471 181.41 temperature 30.0 90 < th dose independent rect. 10 20
477 181.43 atmosphere 1000.0 30 < th dose dependent rect. 9 1
488 181.45 temperature 30.0 270 > th dose dependent rect. 18 17
489 181.46 wind 1.0 10 > th dose independent rect. 7 3
517 181.52 temperature 10.0 10 > th dose independent rect. 7 3
521 181.52 atmosphere 1015.0 10 < th dose independent rect. 7 3
522 181.52 temperature 10.0 10 > th dose independent rect. 10 21
529 181.53 temperature 20.0 270 < th dose dependent sin 2 NA
541 181.56 humidity 90.0 10 < th dose independent rect. 7 2
571 181.63 temperature 20.0 270 > th dose independent rect. 1 12
583 181.68 atmosphere 1005.0 10 > th dose dependent rect. 3 6
585 181.69 wind 9.0 10 < th dose independent rect. 10 21
610 181.74 radiation 20.0 10 < th dose independent rect. 7 15
624 181.80 atmosphere 995.0 1440 > th dose independent rect. 8 3
629 181.80 temperature 10.0 1440 > th dose independent rect. 11 21
640 181.82 temperature 15.0 1440 > th dose independent rect. 8 15
655 181.85 temperature 10.0 90 > th dose dependent rect. 7 2
660 181.87 temperature 15.0 1440 > th dose independent rect. 8 12
692 181.97 radiation 10.0 10 < th dose independent rect. 22 12
702 182.01 humidity 70.0 90 < th dose dependent rect. 8 1
731 182.10 humidity 70.0 90 < th dose dependent rect. 6 3
764 182.18 humidity 50.0 14400 > th dose independent rect. 8 1
822 182.30 radiation 10.0 10 < th dose independent rect. 20 14
845 182.36 radiation 30.0 720 > th dose independent rect. 8 1
847 182.36 humidity 60.0 1440 > th dose independent rect. 14 17
866 182.37 precipitation 0.1 90 < th dose independent rect. 9 22
872 182.37 precipitation 0.1 90 < th dose dependent rect. 9 22
877 182.38 humidity 60.0 1440 > th dose independent rect. 14 13
939 182.45 wind 9.0 4320 < th dose independent rect. 8 2
974 182.52 atmosphere 995.0 10 > th dose independent rect. 10 21