BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0639200 Os06g0639200|J090089I15
         (140 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G60120.2  | chr5:24208153-24211067 FORWARD LENGTH=508           71   2e-13
AT3G54990.1  | chr3:20373718-20376522 REVERSE LENGTH=347           57   4e-09
AT4G36920.1  | chr4:17400998-17403140 FORWARD LENGTH=433           54   3e-08
AT5G67180.1  | chr5:26802119-26803934 REVERSE LENGTH=353           51   2e-07
AT2G28550.3  | chr2:12226168-12228251 REVERSE LENGTH=465           49   1e-06
AT2G39250.1  | chr2:16389010-16390931 REVERSE LENGTH=326           47   2e-06

>AT5G60120.2 | chr5:24208153-24211067 FORWARD LENGTH=508
          Length = 507

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/44 (72%), Positives = 37/44 (84%), Gaps = 3/44 (6%)

Query: 69  AEQWARPPS---RKTRRGPRSRSSQYRGVTFYRRTGRWESHIWS 109
           A +  +PPS   +K+RRGPRS+SSQYRGVTFYRRTGRWESHIW 
Sbjct: 136 ASRVMQPPSQPVKKSRRGPRSKSSQYRGVTFYRRTGRWESHIWD 179



>AT3G54990.1 | chr3:20373718-20376522 REVERSE LENGTH=347
          Length = 346

 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 47/70 (67%), Gaps = 2/70 (2%)

Query: 42  TQQLFPMTAAAAAVVPESTEQRH--VAAAAEQWARPPSRKTRRGPRSRSSQYRGVTFYRR 99
           T  LFP+ A A   +  S E  H    ++ ++  +   +K+RRGPRSRSSQYRGVTFYRR
Sbjct: 72  TGDLFPVVADARRNIEFSVEDSHWLNLSSLQRNTQKMVKKSRRGPRSRSSQYRGVTFYRR 131

Query: 100 TGRWESHIWS 109
           TGRWESHIW 
Sbjct: 132 TGRWESHIWD 141



>AT4G36920.1 | chr4:17400998-17403140 FORWARD LENGTH=433
          Length = 432

 Score = 53.9 bits (128), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/45 (77%), Positives = 40/45 (88%), Gaps = 1/45 (2%)

Query: 64  HVAAAAEQWARPPSRKTRRGPRSRSSQYRGVTFYRRTGRWESHIW 108
           +VAAA  + A+P  +K+RRGPRSRSSQYRGVTFYRRTGRWESHIW
Sbjct: 106 NVAAAVVEPAQP-LKKSRRGPRSRSSQYRGVTFYRRTGRWESHIW 149



>AT5G67180.1 | chr5:26802119-26803934 REVERSE LENGTH=353
          Length = 352

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/35 (88%), Positives = 33/35 (94%)

Query: 75  PPSRKTRRGPRSRSSQYRGVTFYRRTGRWESHIWS 109
           PP +K+RRGPRSRSSQYRGVTFYRRTGRWESHIW 
Sbjct: 81  PPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWD 115



>AT2G28550.3 | chr2:12226168-12228251 REVERSE LENGTH=465
          Length = 464

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/20 (95%), Positives = 19/20 (95%)

Query: 90  QYRGVTFYRRTGRWESHIWS 109
           QYRGVTFYRRTGRWESHIW 
Sbjct: 153 QYRGVTFYRRTGRWESHIWD 172



>AT2G39250.1 | chr2:16389010-16390931 REVERSE LENGTH=326
          Length = 325

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/20 (90%), Positives = 18/20 (90%)

Query: 90  QYRGVTFYRRTGRWESHIWS 109
            YRGVTFYRRTGRWESHIW 
Sbjct: 108 HYRGVTFYRRTGRWESHIWD 127



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.130    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,073,833
Number of extensions: 108115
Number of successful extensions: 317
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 6
Length of query: 140
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 52
Effective length of database: 8,693,961
Effective search space: 452085972
Effective search space used: 452085972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 106 (45.4 bits)