BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0618000 Os06g0618000|AK110866
(399 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0618000 Conserved hypothetical protein 714 0.0
Os02g0194300 Conserved hypothetical protein 252 4e-67
Os08g0510900 Conserved hypothetical protein 241 8e-64
Os02g0499600 129 4e-30
>Os06g0618000 Conserved hypothetical protein
Length = 399
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/386 (91%), Positives = 353/386 (91%)
Query: 14 PVTPGTPAPDLSQATDDRRLLRSRYLAVKSRISDDKDDMARADSVKFRAVFTQVEDLHRL 73
PVTPGTPAPDLSQATDDRRLLRSRYLAVKSRISDDKDDMARADSVKFRAVFTQVEDLHRL
Sbjct: 14 PVTPGTPAPDLSQATDDRRLLRSRYLAVKSRISDDKDDMARADSVKFRAVFTQVEDLHRL 73
Query: 74 VQRPREQIADAEALLGIATSLVASVRTHSALGITPSDFVSGMLKKFGEKRRDDDEAASLR 133
VQRPREQIADAEALLGIATSLVASVRTHSALGITPSDFVSGMLKKFGEKRRDDDEAASLR
Sbjct: 74 VQRPREQIADAEALLGIATSLVASVRTHSALGITPSDFVSGMLKKFGEKRRDDDEAASLR 133
Query: 134 WLDVGLYTSRIFMAVPGCSTMVGPMNTEVLPRRVRVCRKRTAKPRGSECPEQLPDSSNAA 193
WLDVGLYTSRIFMAVPGCSTMVGPMNTEVLPRRVRVCRKRTAKPRGSECPEQLPDSSNAA
Sbjct: 134 WLDVGLYTSRIFMAVPGCSTMVGPMNTEVLPRRVRVCRKRTAKPRGSECPEQLPDSSNAA 193
Query: 194 KTDTDRNMSVIFDVLRKKKNARLENLVLNRKSFAQTVENIFALSFLVKDGRVEISVNDED 253
KTDTDRNMSVIFDVLRKKKNARLENLVLNRKSFAQTVENIFALSFLVKDGRVEISVNDED
Sbjct: 194 KTDTDRNMSVIFDVLRKKKNARLENLVLNRKSFAQTVENIFALSFLVKDGRVEISVNDED 253
Query: 254 HHLVYPRNAPAASAITSGKVVYNHFVFRFDFKDWKLMKDMVVDGEELMQHRPPAPQVXXX 313
HHLVYPRNAPAASAITSGKVVYNHFVFRFDFKDWKLMKDMVVDGEELMQHRPPAPQV
Sbjct: 254 HHLVYPRNAPAASAITSGKVVYNHFVFRFDFKDWKLMKDMVVDGEELMQHRPPAPQVGTH 313
Query: 314 XXXXXXXXXXXXXXXXXXXXXXPAAPAHSTAIRKLCRNRGLVMHDMKEEAATMEEKRSAM 373
PAAPAHSTAIRKLCRNRGLVMHDMKEEAATMEEKRSAM
Sbjct: 314 GSSTTTTTTTTGGANEGPETETPAAPAHSTAIRKLCRNRGLVMHDMKEEAATMEEKRSAM 373
Query: 374 DAQVSQLASKRRRLFQXXXXXXXXLE 399
DAQVSQLASKRRRLFQ LE
Sbjct: 374 DAQVSQLASKRRRLFQDDDDDDGDLE 399
>Os02g0194300 Conserved hypothetical protein
Length = 212
Score = 252 bits (643), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 126/196 (64%), Positives = 149/196 (76%), Gaps = 1/196 (0%)
Query: 63 VFTQVEDLHRLVQRPREQIADAEALLGIATSLVASVRTHSALGITPSDFVSGMLKKFGEK 122
V + + VQRPREQIADAE LL IA +LV SVR+ S+ GITPSDFV+ MLKKFG+
Sbjct: 5 VHKMMASFYNAVQRPREQIADAETLLDIANTLVTSVRSQSSEGITPSDFVTAMLKKFGQS 64
Query: 123 RRDDDEAASLRWLDVGLYTSRIFMAVPGCSTMVGPMNTEVLPRRVRVC-RKRTAKPRGSE 181
D EAASLRW DVGL S +F A PGC TM+GPMNTEV R+ V RKRTA+P +
Sbjct: 65 GGLDSEAASLRWGDVGLSVSHVFRAAPGCCTMLGPMNTEVKQRKAVVANRKRTARPTENA 124
Query: 182 CPEQLPDSSNAAKTDTDRNMSVIFDVLRKKKNARLENLVLNRKSFAQTVENIFALSFLVK 241
PEQL +S KTDTDRN+SVIFD+LR+ K ARLEN+VLNR+SFAQTVEN+FALSFLVK
Sbjct: 125 RPEQLAESLEGVKTDTDRNVSVIFDILRRNKRARLENIVLNRRSFAQTVENVFALSFLVK 184
Query: 242 DGRVEISVNDEDHHLV 257
DGRV I+++D HH+V
Sbjct: 185 DGRVAINIDDNGHHIV 200
>Os08g0510900 Conserved hypothetical protein
Length = 397
Score = 241 bits (615), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 136/289 (47%), Positives = 179/289 (61%), Gaps = 12/289 (4%)
Query: 21 APDLSQATDDRRLLRSRYLAVKSRISDDKDDMARADSVKFRAVFTQVEDLHRLVQRPREQ 80
A Q+ R +R+ Y AVK I +KD AD + +++ LH VQRP+EQ
Sbjct: 49 AAAWGQSRAKREAIRACYAAVKDMIRAEKDG---ADMRRLGVAMGEIKQLHHKVQRPKEQ 105
Query: 81 IADAEALLGIATSLVASVRTHSALGITPSDFVSGMLKKFGEKRRD-DDEAASLRWLDVGL 139
+AD EALL + SL + ++ G TPS+FV+ +L KFG + D S D+G
Sbjct: 106 VADGEALLELVNSLAITAKSKKKDGPTPSEFVTSLLTKFGVRASLLDASIESFSCSDLGA 165
Query: 140 YTSRIFMAVPGCSTMVGPMNTEVLPRRVRVCRKR----TAKPRGSECPEQLPDSSNAAKT 195
S +FM GC TM G +N + RR RV R+ +KP G E PD +
Sbjct: 166 MASPLFMTATGCQTMNGALNLAIEERRKRVARRLFDRFPSKPAG--LYETTPDLDE--RN 221
Query: 196 DTDRNMSVIFDVLRKKKNARLENLVLNRKSFAQTVENIFALSFLVKDGRVEISVNDEDHH 255
DTD+NM+V+F +LRK K +LENL+LNR+SFAQTVENIFALSFLVKDGRVEI V+D+ +H
Sbjct: 222 DTDKNMAVMFKLLRKNKCVKLENLILNRQSFAQTVENIFALSFLVKDGRVEIDVDDKGNH 281
Query: 256 LVYPRNAPAASAITSGKVVYNHFVFRFDFKDWKLMKDMVVDGEELMQHR 304
V PRNAPAA ITS +V+ + +VFRFD KDWK+M+ +V G+ELM HR
Sbjct: 282 FVVPRNAPAAELITSREVINSQYVFRFDTKDWKIMEGVVEPGDELMPHR 330
>Os02g0499600
Length = 181
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 86/129 (66%), Gaps = 1/129 (0%)
Query: 177 PRGSECPEQLPDSSNAAKTDTDRNMSVIFDVLRKKKNARLENLVLNRKSFAQTVENIFAL 236
P + P++ T D NM + +VL+ KK+ARL+NLVL R SF+ TV NI L
Sbjct: 8 PEADSAVQVYPEAELDDLTCGDENMLAMSNVLKNKKSARLKNLVLARNSFSITVYNINTL 67
Query: 237 SFLVKDGRVEISVNDEDHHLVYPRNAPAASAITSGKVVYNHFVFRFDFKDWKLMKDMVVD 296
S LV GRV+I+V+ + H+VYPRNAP A I SGKV HF+ R DF+DW++MKD+VVD
Sbjct: 68 SNLVYVGRVQITVDGDGRHIVYPRNAPTAEDIASGKVKNIHFIMRTDFRDWQMMKDVVVD 127
Query: 297 GEELMQHRP 305
GEELM H P
Sbjct: 128 GEELM-HNP 135
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.132 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,704,995
Number of extensions: 442300
Number of successful extensions: 1242
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1237
Number of HSP's successfully gapped: 4
Length of query: 399
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 296
Effective length of database: 11,657,759
Effective search space: 3450696664
Effective search space used: 3450696664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)