Os06g0618000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0618000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 213.06 | 0.686 | 4.28 | -2.83 | 0.713 | 2.75 | -1.22 | -3.59 | -0.597 | 20.9 | 22.07 | 355 | -- | -- |
| 220.43 | 0.691 | 4.2 | -2.23 | 0.708 | 2.42 | -1.44 | -- | -0.4 | 20 | 22.2 | 395 | -- | -- |
| 217.78 | 0.687 | 4.28 | -2.82 | 0.699 | 2.73 | -- | -3.74 | -0.612 | 20.7 | 21.91 | 368 | -- | -- |
| 227.75 | 0.703 | 4.2 | -2.09 | 0.777 | 2.35 | -- | -- | -0.383 | 20.2 | 21.87 | 365 | -- | -- |
| 234.74 | 0.714 | 4.31 | -3.14 | -- | 3.2 | -- | -4.87 | -0.747 | -- | 22.41 | 477 | -- | -- |
| 327.05 | 0.848 | 4.13 | -1.6 | 1.65 | -- | -0.86 | -- | 0.00636 | 18.8 | -- | -- | -- | -- |
| 328.91 | 0.849 | 4.13 | -1.58 | 1.65 | -- | -- | -- | 0.00448 | 18.7 | -- | -- | -- | -- |
| 249.17 | 0.735 | 4.18 | -2.17 | -- | 2.8 | -- | -- | -0.399 | -- | 23.22 | 465 | -- | -- |
| 335.42 | 0.853 | 4.13 | -- | 0.959 | 1.77 | -- | -- | -0.0381 | 19.6 | 23.23 | 351 | -- | -- |
| 471.66 | 1.01 | 4.1 | -1.62 | -- | -- | -- | -- | -0.028 | -- | -- | -- | -- | -- |
| 394.92 | 0.93 | 4.09 | -- | 1.67 | -- | -- | -- | 0.181 | 18.7 | -- | -- | -- | -- |
| 364.44 | 0.889 | 4.09 | -- | -- | 2.43 | -- | -- | -0.016 | -- | 24.56 | 446 | -- | -- |
| 540.89 | 1.09 | 4.06 | -- | -- | -- | -- | -- | 0.152 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 208.35 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 9 | 215.20 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 10 | 216.35 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 13 | 217.52 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 14 | 217.55 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 23 | 218.64 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 36 | 220.53 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 40 | 220.75 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 58 | 222.42 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 16 |
| 110 | 226.66 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 18 |
| 117 | 226.95 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 131 | 227.52 | temperature | 20 | 270 | > th | dose dependent | sin | 20 | NA |
| 132 | 227.61 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 135 | 227.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 303 | 232.11 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 12 |
| 321 | 232.41 | temperature | 20 | 30 | > th | dose dependent | rect. | 4 | 16 |
| 350 | 232.97 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 20 |
| 358 | 233.28 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 6 |
| 414 | 234.34 | temperature | 10 | 270 | > th | dose dependent | sin | 19 | NA |
| 517 | 235.80 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 15 |
| 526 | 235.96 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 8 |
| 568 | 236.27 | temperature | 30 | 720 | > th | dose independent | sin | 3 | NA |
| 621 | 236.69 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 641 | 236.95 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 20 |
| 642 | 236.97 | temperature | 30 | 270 | > th | dose independent | rect. | 13 | 22 |
| 647 | 237.01 | temperature | 30 | 720 | > th | dose dependent | rect. | 8 | 7 |
| 675 | 237.14 | temperature | 25 | 270 | > th | dose dependent | rect. | 11 | 15 |
| 716 | 237.41 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 20 |
| 758 | 237.77 | temperature | 25 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 764 | 237.81 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 4 |
| 774 | 237.91 | temperature | 30 | 720 | < th | dose independent | sin | 3 | NA |
| 850 | 238.49 | temperature | 30 | 270 | < th | dose independent | sin | 19 | NA |
| 932 | 239.01 | temperature | 30 | 270 | > th | dose independent | sin | 19 | NA |
| 948 | 239.14 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 22 |
| 952 | 239.18 | temperature | 30 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 961 | 239.24 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 16 |