BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0618000 Os06g0618000|AK110866
         (399 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G51130.1  | chr1:18939480-18941560 REVERSE LENGTH=404          313   7e-86
AT3G20760.1  | chr3:7257187-7258891 REVERSE LENGTH=384            287   8e-78

>AT1G51130.1 | chr1:18939480-18941560 REVERSE LENGTH=404
          Length = 403

 Score =  313 bits (803), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 164/333 (49%), Positives = 220/333 (66%), Gaps = 17/333 (5%)

Query: 30  DRRLLRSRYLAVKSRISDDKDDMARADSVKFRAVFTQVEDLHRLVQRPREQIADAEALLG 89
           DRR+LRS+YL++++ I+D KDD+ + DS KF  +   VE+LH+ V++PREQIADAEALL 
Sbjct: 58  DRRILRSKYLSLQNEINDCKDDLMKIDSDKFSRIINAVENLHQQVRKPREQIADAEALLD 117

Query: 90  IATSLVASVRTHSALGITPSDFVSGMLKKFGEKRR--DDDEAA--SLRWLDVGLYTSRIF 145
           IA +L++SV++ SA G++P++FV+ ++  FG+     D DE A  SL+W D+G       
Sbjct: 118 IANTLMSSVKSQSAHGVSPAEFVNALISGFGQGSLGIDTDETAQVSLKWKDLGFAVCSTV 177

Query: 146 MAVPGCSTMVGPMNTEVLPRRVRVCRKRTAKPRGSECPEQLPDSSNAAKTDTDRNMSVIF 205
           +   GCSTM+GPM+TE+  R+    RKRT KP     P+++ DS +  KTDTD+NM+++F
Sbjct: 178 LVSCGCSTMLGPMDTELKQRKRAPNRKRT-KPGEGVRPDEVDDSQSEEKTDTDKNMTIMF 236

Query: 206 DVLRKKKNARLENLVLNRKSFAQTVENIFALSFLVKDGRVEISVNDEDHHLVYPRNAPAA 265
           ++L KKK  +LENLVLNR+SFAQTVEN+FALSFL KDGRVEI V+    H   PRNAP A
Sbjct: 237 NILGKKKRVQLENLVLNRRSFAQTVENLFALSFLAKDGRVEIIVDKSGSHFAMPRNAPDA 296

Query: 266 SAITSGKVVYNHFVFRFDFKDWKLMKDMVVDGEELMQHRPPAPQVXXXXXXXXXXXXXXX 325
           + + SG+V+YNHFVFR DFKDWKLM +MV  GEELM HR  A                  
Sbjct: 297 NVVMSGEVIYNHFVFRLDFKDWKLMSEMVPLGEELMPHRQTAVASSSCPAASAPASADF- 355

Query: 326 XXXXXXXXXXPAAPAHSTAIRKLCRNRGLVMHD 358
                           +T IRKL RNRGLV+ +
Sbjct: 356 -----------TQDTQTTPIRKLSRNRGLVVQE 377



>AT3G20760.1 | chr3:7257187-7258891 REVERSE LENGTH=384
          Length = 383

 Score =  287 bits (734), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 144/281 (51%), Positives = 200/281 (71%), Gaps = 5/281 (1%)

Query: 26  QATDDRRLLRSRYLAVKSRISDDKDDMARADSVKFRAVFTQVEDLHRLVQRPREQIADAE 85
           Q   DRR +RS+YLA+  +I D KDD+ + DS KF ++  +VE+LH+ V++PREQIADAE
Sbjct: 57  QGIADRRAIRSQYLALTHKIKDAKDDLTKIDSNKFNSIINEVENLHQKVRKPREQIADAE 116

Query: 86  ALLGIATSLVASVRTHSALG-ITPSDFVSGMLKKFGEK--RRDDDE--AASLRWLDVGLY 140
           ALL +  S+V+SV++ SA G ++P++FV+ ++  FG+   R D DE    S++W D+G  
Sbjct: 117 ALLDLTNSVVSSVKSQSAHGGVSPAEFVNALINGFGKTSLRIDADENTQVSMKWKDLGFT 176

Query: 141 TSRIFMAVPGCSTMVGPMNTEVLPRRVRVCRKRTAKPRGSECPEQLPDSSNAAKTDTDRN 200
                +   GC+TM+GPM +E+  R+ RV  ++  KP     PE++ D+    K+DTD N
Sbjct: 177 VCSTVLVSCGCTTMMGPMYSEMKQRKSRVGNRKRTKPGAGVKPEEVDDTEAEKKSDTDNN 236

Query: 201 MSVIFDVLRKKKNARLENLVLNRKSFAQTVENIFALSFLVKDGRVEISVNDEDHHLVYPR 260
           M+V+F++LRK K  ++ENLVLNRKSFAQT EN+FALSFLVKDGRVEI+V++   H V PR
Sbjct: 237 MAVMFNILRKNKRVKIENLVLNRKSFAQTAENMFALSFLVKDGRVEITVDNNGSHFVEPR 296

Query: 261 NAPAASAITSGKVVYNHFVFRFDFKDWKLMKDMVVDGEELM 301
           NAPAA+ + SG+V YNHFV RFD+KDW+ M  MV  GEELM
Sbjct: 297 NAPAANLVLSGEVAYNHFVLRFDYKDWEPMSKMVAVGEELM 337



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,190,535
Number of extensions: 270983
Number of successful extensions: 775
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 771
Number of HSP's successfully gapped: 2
Length of query: 399
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 298
Effective length of database: 8,337,553
Effective search space: 2484590794
Effective search space used: 2484590794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)