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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0510900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0431) R2 : 0.143
β1 : 0.406 (0.158) R2dD : 0.0149 R2D : 0.0146
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.542 (0.48) R2dE : 0.00326 R2E : -0.0336
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 14.1 (2.11) R2dD*E : 0.149 R2D*E : 0.111
γ1 : -0.218 (0.0905) R2dN8 : 0.0153 R2N8 : 0.0111
σ : 0.782
deviance : 281.82
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 0.5
memory length : 229
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 17.8
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
280.45 0.787 2.92 0.408 0.204 -0.613 -0.00502 13.9 -0.217 5.5 0.5999 230 17.8 --
302.41 0.81 2.98 0.252 0.0399 0.739 -0.826 -- -0.217 23.1 3.098 270 22.7 --
279.9 0.779 2.93 0.418 0.196 -0.598 -- 14.1 -0.229 5.25 0.5003 229 17.6 --
305.88 0.815 2.97 0.184 0.129 1.32 -- -- -0.164 6.49 0.4871 266 18.5 --
281.82 0.782 2.93 0.406 -- -0.542 -- 14.1 -0.218 -- 0.5 229 17.8 --
308.07 0.823 2.99 0.3 0.278 -- 1.58 -- -0.23 8.23 -- -- -- --
314.88 0.831 2.99 0.341 0.31 -- -- -- -0.234 6.74 -- -- -- --
306.04 0.815 2.98 0.194 -- 1.41 -- -- -0.174 -- 0.5002 266 21.6 --
306.55 0.815 2.97 -- 0.113 1.47 -- -- -0.175 5.43 0.5 266 20.1 --
319.91 0.836 3 0.348 -- -- -- -- -0.228 -- -- -- -- --
317.95 0.834 3 -- 0.314 -- -- -- -0.272 6.67 -- -- -- --
307.07 0.816 2.99 -- -- 1.51 -- -- -0.183 -- 0.4507 266 21.2 --
323.11 0.839 3.01 -- -- -- -- -- -0.267 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 281.96 wind 1 90 < th dose dependent rect. 4 6
3 283.03 wind 1 720 < th dose dependent rect. 4 1
5 284.61 wind 1 90 < th dose dependent rect. 4 1
9 286.03 wind 1 90 < th dose independent rect. 4 1
11 286.24 wind 1 270 < th dose dependent rect. 4 15
14 286.31 wind 1 270 < th dose dependent rect. 4 12
23 288.57 wind 1 720 < th dose independent rect. 4 1
39 289.77 wind 1 270 < th dose dependent rect. 6 1
49 291.54 wind 3 10 < th dose dependent rect. 8 2
57 292.07 radiation 30 90 > th dose independent rect. 8 1
58 292.15 wind 1 1440 > th dose independent rect. 4 1
76 292.25 wind 1 270 < th dose dependent rect. 2 1
78 292.29 wind 1 270 < th dose dependent sin 1 NA
100 292.51 wind 3 10 < th dose independent rect. 19 16
106 292.69 radiation 30 90 < th dose independent sin 11 NA
111 292.80 wind 1 270 < th dose dependent rect. 1 20
112 292.83 wind 1 270 < th dose dependent rect. 1 18
116 292.89 wind 1 270 < th dose dependent rect. 1 14
119 292.92 humidity 60 90 < th dose dependent rect. 9 1
136 292.97 wind 3 10 < th dose independent rect. 8 2
138 292.99 radiation 30 90 > th dose independent sin 11 NA
139 292.99 wind 1 90 < th dose independent rect. 4 6
155 293.27 humidity 90 270 > th dose dependent rect. 5 2
157 293.49 humidity 60 90 < th dose independent rect. 9 1
196 294.01 wind 1 270 < th dose independent rect. 4 15
201 294.04 temperature 20 720 < th dose dependent rect. 11 13
203 294.10 wind 1 270 < th dose independent rect. 4 12
213 294.19 radiation 40 90 > th dose independent rect. 15 1
230 294.19 radiation 40 90 > th dose dependent rect. 15 1
247 294.22 wind 1 90 < th dose dependent rect. 9 1
251 294.25 humidity 90 270 > th dose independent rect. 6 1
283 294.41 temperature 20 720 < th dose dependent sin 19 NA
296 294.55 temperature 25 90 > th dose independent rect. 8 2
297 294.55 radiation 20 90 > th dose dependent rect. 7 2
317 294.62 humidity 90 90 > th dose dependent rect. 13 5
322 294.69 humidity 70 90 < th dose independent rect. 19 1
337 294.73 humidity 90 90 > th dose independent rect. 16 1
338 294.73 humidity 90 90 > th dose dependent rect. 16 1
339 294.73 humidity 90 90 > th dose dependent rect. 15 3
343 294.75 radiation 20 90 > th dose dependent rect. 15 20
360 294.99 humidity 70 90 < th dose dependent rect. 19 1
384 295.20 temperature 20 720 > th dose independent rect. 8 17
390 295.27 radiation 20 90 > th dose dependent sin 11 NA
398 295.39 humidity 90 90 > th dose independent rect. 13 5
413 295.52 temperature 15 1440 > th dose independent rect. 12 4
415 295.53 wind 1 270 < th dose independent rect. 2 1
419 295.55 wind 3 10 < th dose independent rect. 2 9
480 295.72 temperature 20 720 > th dose independent rect. 13 12
481 295.73 wind 3 43200 < th dose independent rect. 23 2
505 295.88 wind 1 90 < th dose independent rect. 4 3
506 295.88 humidity 90 720 > th dose dependent rect. 13 6
512 295.91 temperature 20 720 < th dose independent rect. 9 16
534 295.96 humidity 90 720 > th dose dependent rect. 15 2
535 295.97 wind 3 10 > th dose independent sin 5 NA
574 296.00 temperature 20 720 < th dose independent rect. 11 14
578 296.01 temperature 15 1440 > th dose independent rect. 12 7
580 296.02 wind 3 43200 > th dose independent rect. 23 3
593 296.08 wind 3 10 < th dose independent rect. 24 11
599 296.11 temperature 20 1440 < th dose dependent rect. 11 5
602 296.14 humidity 90 720 > th dose independent rect. 13 5
614 296.18 temperature 25 720 < th dose dependent rect. 16 2
627 296.22 temperature 15 30 > th dose independent rect. 7 23
701 296.36 wind 1 90 < th dose independent rect. 9 1
726 296.42 temperature 15 4320 < th dose dependent rect. 6 1
733 296.43 temperature 20 1440 < th dose independent rect. 12 2
739 296.45 humidity 90 720 > th dose independent rect. 15 2
768 296.53 temperature 20 1440 < th dose dependent rect. 13 1
771 296.53 temperature 15 4320 < th dose dependent rect. 4 11
810 296.60 wind 9 270 < th dose dependent rect. 12 22
811 296.61 temperature 20 720 < th dose independent rect. 6 19
819 296.63 temperature 15 4320 < th dose dependent rect. 5 6
825 296.65 temperature 20 720 < th dose independent sin 19 NA
864 296.74 wind 3 270 < th dose independent rect. 23 11
875 296.76 temperature 20 90 < th dose independent rect. 16 3
910 296.81 humidity 90 1440 > th dose independent rect. 8 10
929 296.83 wind 1 270 < th dose independent rect. 6 1
935 296.84 humidity 90 1440 > th dose independent rect. 11 1
980 296.89 humidity 90 1440 < th dose independent rect. 8 10
984 296.90 temperature 20 720 > th dose independent rect. 22 3
985 296.90 wind 3 10 > th dose independent rect. 21 17
989 296.91 wind 5 270 < th dose dependent rect. 23 11
990 296.92 temperature 20 720 > th dose independent sin 20 NA
992 296.92 temperature 25 90 < th dose dependent rect. 16 1