BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0617800 Os06g0617800|AK067505
(387 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0617800 Ribose-phosphate pyrophosphokinase 2 (EC 2.7.6... 685 0.0
Os02g0127700 Ribose-phosphate pyrophosphokinase 1 (EC 2.7.6... 411 e-115
AK067951 392 e-109
Os01g0723600 Ribose-phosphate pyrophosphokinase 3 (EC 2.7.6... 75 7e-14
AK062992 68 1e-11
>Os06g0617800 Ribose-phosphate pyrophosphokinase 2 (EC 2.7.6.1) (Phosphoribosyl
pyrophosphate synthetase 2). Splice isoform 1
Length = 387
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/355 (96%), Positives = 344/355 (96%)
Query: 33 CVMGSEQVRVVVEEEGKTKKRMGVAEPRSAPPAVWTPRAPAQEARLAALRTDGRDSRLKI 92
CVMGSEQVRVVVEEEGKTKKRMGVAEPRSAPPAVWTPRAPAQEARLAALRTDGRDSRLKI
Sbjct: 33 CVMGSEQVRVVVEEEGKTKKRMGVAEPRSAPPAVWTPRAPAQEARLAALRTDGRDSRLKI 92
Query: 93 FSGTANRPLAQEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPTCSPVNEN 152
FSGTANRPLAQEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPTCSPVNEN
Sbjct: 93 FSGTANRPLAQEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPTCSPVNEN 152
Query: 153 LMELFVMIDACRRASARSITVVIPYFGYARADRKAQGREAITAKLSANLLTEAGSDRVIV 212
LMELFVMIDACRRASARSITVVIPYFGYARADRKAQGREAITAKLSANLLTEAGSDRVIV
Sbjct: 153 LMELFVMIDACRRASARSITVVIPYFGYARADRKAQGREAITAKLSANLLTEAGSDRVIV 212
Query: 213 CDIHSTQALGYFDIPVDHIHGQPVILDYLASKTISKDLXXXXXXXXXXXRARAFAKKLSD 272
CDIHSTQALGYFDIPVDHIHGQPVILDYLASKTISKDL RARAFAKKLSD
Sbjct: 213 CDIHSTQALGYFDIPVDHIHGQPVILDYLASKTISKDLVVVSPDVGGVVRARAFAKKLSD 272
Query: 273 APLAIVDKRRQGHNMSEVMHLIGDVKGKVAIMVDDMIDTAGTITSAAALLKQEGAEAVYA 332
APLAIVDKRRQGHNMSEVMHLIGDVKGKVAIMVDDMIDTAGTITSAAALLKQEGAEAVYA
Sbjct: 273 APLAIVDKRRQGHNMSEVMHLIGDVKGKVAIMVDDMIDTAGTITSAAALLKQEGAEAVYA 332
Query: 333 CSTHAVFRFGSWFIVTSMIHVIVLIHWLVAKEPCYGMIRQIGFMFDQYKNDRVEQ 387
CSTHAVFRFGSWFIVTSMIHVIVLIHWLVAKEPCYGMIRQIGFMFDQYKNDRVEQ
Sbjct: 333 CSTHAVFRFGSWFIVTSMIHVIVLIHWLVAKEPCYGMIRQIGFMFDQYKNDRVEQ 387
>Os02g0127700 Ribose-phosphate pyrophosphokinase 1 (EC 2.7.6.1) (Phosphoribosyl
pyrophosphate synthetase 1)
Length = 396
Score = 411 bits (1057), Expect = e-115, Method: Compositional matrix adjust.
Identities = 196/254 (77%), Positives = 223/254 (87%), Gaps = 1/254 (0%)
Query: 87 DSRLKIFSGTANRPLAQEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPTC 146
D+RL+IFSGTAN L+QEIASYLG++LGK+ IKRFADGEIYVQLQESVRGCDVFLVQPTC
Sbjct: 77 DTRLRIFSGTANPSLSQEIASYLGLELGKINIKRFADGEIYVQLQESVRGCDVFLVQPTC 136
Query: 147 SPVNENLMELFVMIDACRRASARSITVVIPYFGYARADRKAQGREAITAKLSANLLTEAG 206
P NENLMEL +MIDACRRASA++IT VIPYFGYARADRK+QGRE+I AKL AN++TEAG
Sbjct: 137 PPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKSQGRESIAAKLVANMITEAG 196
Query: 207 SDRVIVCDIHSTQALGYFDIPVDHIHGQPVILDYLASKTI-SKDLXXXXXXXXXXXRARA 265
++RV+VCD+HS+QA+GYFDIPVDH++GQPVILDYLASKTI S DL RARA
Sbjct: 197 ANRVLVCDLHSSQAMGYFDIPVDHVYGQPVILDYLASKTICSDDLVVVSPDVGGVARARA 256
Query: 266 FAKKLSDAPLAIVDKRRQGHNMSEVMHLIGDVKGKVAIMVDDMIDTAGTITSAAALLKQE 325
FAKKLSDAPLAIVDKRR GHN++EVM+LIGDV+GKVA+M+DDMIDTAGTI A LL QE
Sbjct: 257 FAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVRGKVAVMMDDMIDTAGTIAKGAELLHQE 316
Query: 326 GAEAVYACSTHAVF 339
GA VYAC THAVF
Sbjct: 317 GAREVYACCTHAVF 330
>AK067951
Length = 382
Score = 392 bits (1006), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/253 (74%), Positives = 216/253 (85%), Gaps = 2/253 (0%)
Query: 89 RLKIFSGTANRPLAQEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPTCSP 148
RL+IFSGTAN LAQE+A YLG++LG+V IKRFADGE+YVQLQESVRGCDVFLVQPTC P
Sbjct: 70 RLRIFSGTANPRLAQEVACYLGMELGRVKIKRFADGELYVQLQESVRGCDVFLVQPTCPP 129
Query: 149 VNENLMELFVMIDACRRASARSITVVIPYFGYARADRKAQ-GREAITAKLSANLLTEAGS 207
NENLMEL +MIDACRRASA++IT V+PYFGYARADRK + GRE+I AKL ANL+TEAG+
Sbjct: 130 ANENLMELLIMIDACRRASAKTITAVVPYFGYARADRKMRGGRESIAAKLVANLITEAGA 189
Query: 208 DRVIVCDIHSTQALGYFDIPVDHIHGQPVILDYLASKTISKD-LXXXXXXXXXXXRARAF 266
RV+ CD+HS Q++GYFDIPVDH++GQPVILDYLASKTI D + RAR F
Sbjct: 190 HRVLACDLHSGQSIGYFDIPVDHVYGQPVILDYLASKTICPDEVVVVSPDVGGVARARTF 249
Query: 267 AKKLSDAPLAIVDKRRQGHNMSEVMHLIGDVKGKVAIMVDDMIDTAGTITSAAALLKQEG 326
AKKLSDAPLAIVDKRRQGHN SEV+HLIGDV+GKVA+MVDDMIDTAGT++ A LL +EG
Sbjct: 250 AKKLSDAPLAIVDKRRQGHNQSEVVHLIGDVRGKVAVMVDDMIDTAGTVSQGAELLHREG 309
Query: 327 AEAVYACSTHAVF 339
A AVYACSTHAV
Sbjct: 310 ARAVYACSTHAVL 322
>Os01g0723600 Ribose-phosphate pyrophosphokinase 3 (EC 2.7.6.1) (Phosphoribosyl
pyrophosphate synthetase 3)
Length = 409
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 119/271 (43%), Gaps = 18/271 (6%)
Query: 85 GRDSRLKIFSGTANRPLAQEI-ASYLGVDLGKVLIKRFADG--EIYVQLQESVRGCDVFL 141
G + +F R LA+++ A ++L + + FADG +++ ++RG V
Sbjct: 94 GAHKNVLLFHCEEMRELAEQVVARNDDIELRSISWRTFADGFPNLFISNAHTIRGQHVAF 153
Query: 142 VQPTCSPVNENLMELFVMIDACRRASARSITVVIPYFGYARADRKAQGREAITAKLSANL 201
+ SP + E +I A + S T+++P+F ++R + TA A +
Sbjct: 154 LASFSSP--SVIFEQLSIIYALPKLFISSFTLILPFFPTGTSERMEDEGDVATAFTLARI 211
Query: 202 LTE-----AGSDRVIVCDIHSTQALGYFD---IPVDHIHGQPVILDYLASKTISKDLXXX 253
L+ G +++ DIH+ Q YF +P G P++ L S ++
Sbjct: 212 LSNIPISRGGPSSLVIFDIHALQERFYFGDSVLPCFE-SGIPLLKSRLQELPDSDNITIA 270
Query: 254 XXXXXXXXRARAFAKKLSDAPLAIVDKRRQGHNMSEVMHLIGDVKGKVAIMVDDMIDTAG 313
R F K+L P+ + +K R+G V GD +G+ ++VDD++ + G
Sbjct: 271 FPDDGAWKR---FYKQLQHFPMVVCNKVREGEQRI-VRIKEGDPRGRHVVIVDDLVQSGG 326
Query: 314 TITSAAALLKQEGAEAVYACSTHAVFRFGSW 344
T+ +L + GA V A TH +F SW
Sbjct: 327 TLIECQKVLAEHGAAKVSAYVTHGIFPNKSW 357
>AK062992
Length = 346
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 114/260 (43%), Gaps = 19/260 (7%)
Query: 99 RPLAQEIASYLG---VDLGKVLIKRFAD--GEIYVQLQESVRGCDVFLVQPTCSPVNENL 153
+ LA+EI S ++LG + + F D I+++ E +R V + +P + +
Sbjct: 43 KNLAEEIRSCSKEHLIELGAIDWQEFPDRWPNIFIRNSEQIRNSHVLFLASLHNP--QTI 100
Query: 154 MELFVMIDACRRASARSITVVIPYFGYARADR-KAQGREA----ITAKLSANLLTEAGSD 208
E ++ + RS+ V++PYF +R + QG A + LSA LT G
Sbjct: 101 FEQISLLYHIPKYLCRSLKVLLPYFPTGTMERIQIQGEIATAYSLAQMLSAIPLTRTGPC 160
Query: 209 RVIVCDIHSTQALGYF--DIPVDHIHGQPVILDYLASKTISKDLXXXXXXXXXXXRARAF 266
V++ D+H+ Q YF +I V ++LD L ++ + + F
Sbjct: 161 EVVILDVHALQNQFYFSPNIIVRLESTVDLLLDQLKARADQNE--KYAIVFPDDGAHKRF 218
Query: 267 AKKLSDA--PLAIVDKRRQGHNMSEVMHLIGDVKGKVAIMVDDMIDTAGTITSAAALLKQ 324
+ D P I K R+G + G+ +G ++VDD++ + GTI A L Q
Sbjct: 219 GQMFDDKIFPKLICSKIREGDERKTTIK-DGNPEGYHCMIVDDLVQSGGTIIECAHALLQ 277
Query: 325 EGAEAVYACSTHAVFRFGSW 344
+GA V A H +F SW
Sbjct: 278 KGAVNVSAFVGHGIFPNDSW 297
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,866,939
Number of extensions: 408056
Number of successful extensions: 1201
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1198
Number of HSP's successfully gapped: 6
Length of query: 387
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 284
Effective length of database: 11,657,759
Effective search space: 3310803556
Effective search space used: 3310803556
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)