Os06g0617800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribose-phosphate pyrophosphokinase 2 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 2). Splice isoform 1.
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Os06g0617800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribose-phosphate pyrophosphokinase 2 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 2). Splice isoform 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.03 | 0.402 | 11.3 | -2.26 | 1.42 | -0.597 | -0.49 | -0.186 | -0.397 | 4.43 | 25.67 | 1369 | -- | -- |
| 73.04 | 0.398 | 11.3 | -2.21 | 1.42 | -0.612 | -0.494 | -- | -0.388 | 4.43 | 25.76 | 1370 | -- | -- |
| 73.67 | 0.4 | 11.3 | -2.26 | 1.42 | -0.597 | -- | -0.225 | -0.398 | 4.43 | 25.74 | 1360 | -- | -- |
| 73.7 | 0.4 | 11.3 | -2.21 | 1.42 | -0.616 | -- | -- | -0.389 | 4.44 | 25.8 | 1367 | -- | -- |
| 109.68 | 0.488 | 11.3 | -1.75 | -- | -1.85 | -- | 2.64 | -0.157 | -- | 24.46 | 243 | -- | -- |
| 89.37 | 0.443 | 11.3 | -2.42 | 1.36 | -- | -0.629 | -- | -0.439 | 4.54 | -- | -- | -- | -- |
| 90.42 | 0.445 | 11.3 | -2.41 | 1.35 | -- | -- | -- | -0.435 | 4.57 | -- | -- | -- | -- |
| 112.3 | 0.494 | 11.3 | -2.09 | -- | -1.64 | -- | -- | -0.236 | -- | 24.16 | 242 | -- | -- |
| 95.11 | 0.454 | 11.1 | -- | 1.38 | -1.92 | -- | -- | 0.433 | 4.48 | 14.4 | 47520 | -- | -- |
| 187.85 | 0.64 | 11.4 | -2.36 | -- | -- | -- | -- | -0.4 | -- | -- | -- | -- | -- |
| 243.95 | 0.731 | 11.3 | -- | 1.31 | -- | -- | -- | -0.166 | 4.62 | -- | -- | -- | -- |
| 196.23 | 0.652 | 11.2 | -- | -- | -1.86 | -- | -- | 0.439 | -- | 13.96 | 47520 | -- | -- |
| 334.94 | 0.854 | 11.3 | -- | -- | -- | -- | -- | -0.138 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.33 | temperature | 15 | 30 | > th | dose dependent | rect. | 5 | 14 |
| 11 | 71.92 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 13 | 72.02 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 3 |
| 16 | 72.08 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 19 | 72.25 | radiation | 1 | 90 | > th | dose independent | sin | 13 | NA |
| 24 | 72.34 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 10 |
| 54 | 72.49 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 67 | 72.56 | temperature | 25 | 1440 | > th | dose dependent | sin | 0 | NA |
| 79 | 72.60 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 11 |
| 84 | 72.61 | temperature | 15 | 1440 | > th | dose dependent | rect. | 7 | 7 |
| 94 | 72.66 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 101 | 72.67 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 20 |
| 126 | 72.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 205 | 72.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 21 |
| 206 | 72.92 | radiation | 1 | 30 | < th | dose independent | sin | 13 | NA |
| 231 | 72.96 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 381 | 73.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 406 | 73.24 | radiation | 1 | 30 | < th | dose dependent | sin | 13 | NA |
| 414 | 73.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 415 | 73.25 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 439 | 73.29 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 3 |
| 440 | 73.29 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 5 |
| 467 | 73.35 | temperature | 30 | 30 | < th | dose independent | rect. | 11 | 18 |
| 484 | 73.37 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 491 | 73.38 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 493 | 73.39 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 499 | 73.40 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 532 | 73.45 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 5 |
| 553 | 73.50 | radiation | 1 | 90 | > th | dose independent | rect. | 12 | 23 |
| 570 | 73.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 7 |
| 581 | 73.56 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 5 |
| 594 | 73.57 | radiation | 1 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 600 | 73.59 | radiation | 1 | 30 | > th | dose independent | rect. | 15 | 18 |
| 601 | 73.59 | temperature | 10 | 1440 | > th | dose dependent | sin | 0 | NA |
| 764 | 73.86 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 11 | 8 |
| 809 | 73.92 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 13 | 6 |
| 835 | 73.94 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 11 | 8 |
| 836 | 73.94 | radiation | 1 | 90 | < th | dose independent | rect. | 5 | 23 |
| 870 | 73.98 | radiation | 1 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 875 | 73.99 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 12 |
| 899 | 74.02 | temperature | 30 | 90 | < th | dose independent | rect. | 10 | 13 |
| 900 | 74.02 | radiation | 1 | 30 | > th | dose independent | rect. | 15 | 20 |
| 923 | 74.04 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 991 | 74.10 | radiation | 1 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 993 | 74.11 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 18 | 1 |