BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0617800 Os06g0617800|AK067505
(387 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G44530.1 | chr2:18383732-18385974 FORWARD LENGTH=395 410 e-115
AT2G35390.2 | chr2:14895528-14897581 REVERSE LENGTH=404 407 e-114
AT1G32380.1 | chr1:11682033-11684229 FORWARD LENGTH=401 400 e-112
AT1G10700.1 | chr1:3554157-3556274 FORWARD LENGTH=412 77 1e-14
AT2G42910.1 | chr2:17856396-17858394 FORWARD LENGTH=338 63 3e-10
>AT2G44530.1 | chr2:18383732-18385974 FORWARD LENGTH=395
Length = 394
Score = 410 bits (1054), Expect = e-115, Method: Compositional matrix adjust.
Identities = 197/253 (77%), Positives = 221/253 (87%), Gaps = 1/253 (0%)
Query: 88 SRLKIFSGTANRPLAQEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPTCS 147
+RL+IFSGTAN LAQEI+ YLG+DLGK+ IKRFADGEIYVQLQESVRGCDVFLVQPTC
Sbjct: 76 TRLRIFSGTANPILAQEISCYLGLDLGKIKIKRFADGEIYVQLQESVRGCDVFLVQPTCP 135
Query: 148 PVNENLMELFVMIDACRRASARSITVVIPYFGYARADRKAQGREAITAKLSANLLTEAGS 207
P NENLMEL VMIDACRRASA++IT VIPYFGYARADRK QGRE+I AKL ANL+T++G+
Sbjct: 136 PANENLMELLVMIDACRRASAKTITAVIPYFGYARADRKTQGRESIAAKLVANLITQSGA 195
Query: 208 DRVIVCDIHSTQALGYFDIPVDHIHGQPVILDYLASKTI-SKDLXXXXXXXXXXXRARAF 266
DRV+ CD+HS Q++GYFDIPVDH++GQPVILDYLASK I S+DL RARAF
Sbjct: 196 DRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKAISSEDLVVVSPDVGGVARARAF 255
Query: 267 AKKLSDAPLAIVDKRRQGHNMSEVMHLIGDVKGKVAIMVDDMIDTAGTITSAAALLKQEG 326
AKKLSDAPLAIVDKRR GHN++EVM+LIGDVKGKVAIMVDDMIDTAGTI+ AALL QEG
Sbjct: 256 AKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAIMVDDMIDTAGTISKGAALLHQEG 315
Query: 327 AEAVYACSTHAVF 339
A VYAC+THAVF
Sbjct: 316 AREVYACTTHAVF 328
>AT2G35390.2 | chr2:14895528-14897581 REVERSE LENGTH=404
Length = 403
Score = 407 bits (1045), Expect = e-114, Method: Compositional matrix adjust.
Identities = 194/254 (76%), Positives = 220/254 (86%), Gaps = 1/254 (0%)
Query: 87 DSRLKIFSGTANRPLAQEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPTC 146
++RLK+FSGTAN LAQEIA Y+G+DLGKV IKRFADGEIYVQLQESVRGCDV+LVQPTC
Sbjct: 90 NTRLKLFSGTANPALAQEIAWYMGLDLGKVNIKRFADGEIYVQLQESVRGCDVYLVQPTC 149
Query: 147 SPVNENLMELFVMIDACRRASARSITVVIPYFGYARADRKAQGREAITAKLSANLLTEAG 206
+P NENLMEL +M+DACRRASA+ +T VIPYFGYARADRK QGRE+I AKL ANL+TEAG
Sbjct: 150 TPTNENLMELLIMVDACRRASAKKVTAVIPYFGYARADRKTQGRESIAAKLVANLITEAG 209
Query: 207 SDRVIVCDIHSTQALGYFDIPVDHIHGQPVILDYLASKTI-SKDLXXXXXXXXXXXRARA 265
+DRV+ CD+HS Q++GYFDIPVDH++ QPVILDYLASK+I S+DL RARA
Sbjct: 210 ADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKSIPSEDLVVVSPDVGGVARARA 269
Query: 266 FAKKLSDAPLAIVDKRRQGHNMSEVMHLIGDVKGKVAIMVDDMIDTAGTITSAAALLKQE 325
FAKKLSDAPLAIVDKRR GHN++EVM+LIGDV+GKVAIMVDDMIDTAGTI AALL QE
Sbjct: 270 FAKKLSDAPLAIVDKRRSGHNVAEVMNLIGDVRGKVAIMVDDMIDTAGTIVKGAALLHQE 329
Query: 326 GAEAVYACSTHAVF 339
GA VYAC THAVF
Sbjct: 330 GAREVYACCTHAVF 343
>AT1G32380.1 | chr1:11682033-11684229 FORWARD LENGTH=401
Length = 400
Score = 400 bits (1029), Expect = e-112, Method: Compositional matrix adjust.
Identities = 189/255 (74%), Positives = 220/255 (86%), Gaps = 1/255 (0%)
Query: 86 RDSRLKIFSGTANRPLAQEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPT 145
+++LK+FSGTAN L+QEIA Y+G++LGKV IKRFADGEIYVQL+ESVRGCDVFLVQPT
Sbjct: 86 NNTKLKLFSGTANPALSQEIAWYMGLELGKVSIKRFADGEIYVQLKESVRGCDVFLVQPT 145
Query: 146 CSPVNENLMELFVMIDACRRASARSITVVIPYFGYARADRKAQGREAITAKLSANLLTEA 205
C+P NENLMEL +M+DACRRASA+ +T VIPYFGYARADRK QGRE+I AKL ANL+TEA
Sbjct: 146 CTPTNENLMELLIMVDACRRASAKKVTAVIPYFGYARADRKTQGRESIAAKLVANLITEA 205
Query: 206 GSDRVIVCDIHSTQALGYFDIPVDHIHGQPVILDYLASKTI-SKDLXXXXXXXXXXXRAR 264
G+DRV+ CD+HS Q++GYFDIPVDH++ QPVILDYLASK+I S+DL RAR
Sbjct: 206 GADRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKSISSEDLVVVSPDVGGVARAR 265
Query: 265 AFAKKLSDAPLAIVDKRRQGHNMSEVMHLIGDVKGKVAIMVDDMIDTAGTITSAAALLKQ 324
AFAKKLSDAPLAIVDKRR GHN++EVM+LIGDVKGKVA+MVDD+IDTAGTI AALL +
Sbjct: 266 AFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDIIDTAGTIVKGAALLHE 325
Query: 325 EGAEAVYACSTHAVF 339
EGA VYAC THAVF
Sbjct: 326 EGAREVYACCTHAVF 340
>AT1G10700.1 | chr1:3554157-3556274 FORWARD LENGTH=412
Length = 411
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 127/295 (43%), Gaps = 20/295 (6%)
Query: 63 PPAVWTPRAPAQEARLAALRTDGRDS--RLKIFSGTANRPLAQEI-ASYLGVDLGKVLIK 119
P ++ P + + AA G S R+ +F R LA+ I A ++L + K
Sbjct: 72 PISLINPNSSSPITMAAATSESGSKSSKRVCLFHSDETRDLAERIVAKSDCIELRSINWK 131
Query: 120 RFADG--EIYVQLQESVRGCDVFLVQPTCSPVNENLMELFVMIDACRRASARSITVVIPY 177
+F DG +++Q + +RG V + SP + E +I A + S T+V+P+
Sbjct: 132 KFDDGFPNLFIQNAQGIRGQHVAFLASFSSPAV--IFEQLSVIYALPKLFVSSFTLVLPF 189
Query: 178 FGYARADRKAQGREAITAKLSANLLTE-----AGSDRVIVCDIHSTQALGYFD---IPVD 229
F ++R + TA A +L+ G ++ DIH+ Q YF +P
Sbjct: 190 FPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLVTFDIHALQERFYFGDTILPCF 249
Query: 230 HIHGQPVILDYLASKTISKDLXXXXXXXXXXXRARAFAKKLSDAPLAIVDKRRQGHNMSE 289
G P++ L S S ++ R F K+L P + +K R G +
Sbjct: 250 E-SGIPLLKSRLQSLPDSDNISIAFPDDGAWKR---FHKQLQHYPTIVCNKVRMG-DKRI 304
Query: 290 VMHLIGDVKGKVAIMVDDMIDTAGTITSAAALLKQEGAEAVYACSTHAVFRFGSW 344
V GD +G+ ++VDD++ + GT+ +L GA + A TH +F SW
Sbjct: 305 VRIKEGDAEGRHVVIVDDLVQSGGTLIECQKVLAAHGAAKISAYVTHGIFPRSSW 359
>AT2G42910.1 | chr2:17856396-17858394 FORWARD LENGTH=338
Length = 337
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 121/277 (43%), Gaps = 20/277 (7%)
Query: 80 ALRTDGRDSRLKIFSGTANRPLAQEIASYLG-VDLGKVLIKRFADG--EIYVQLQESVRG 136
A+ ++ + ++ +F LA+ IA+ + L + + FADG +++ +RG
Sbjct: 18 AIVSELQKKKVHLFYCLECEELARNIAAESDHITLQSINWRSFADGFPNLFINNAHDIRG 77
Query: 137 CDVFLVQPTCSPVNENLMELFVMIDACRRASARSITVVIPYF---GYARADRKAQGREAI 193
V + SP + E +I R S T+V+P+F + R + + A
Sbjct: 78 QHVAFLASFSSPAV--IFEQISVIYLLPRLFVASFTLVLPFFPTGSFERMEEEGDVATAF 135
Query: 194 T-AKLSANL-LTEAGSDRVIVCDIHSTQALGYFD---IPVDHIHGQPVILDYLASKTISK 248
T A++ +N+ ++ G V++ DIH+ Q YF +P+ G P++ L ++
Sbjct: 136 TMARIVSNIPISRGGPTSVVIYDIHALQERFYFADQVLPLFET-GIPLLTKRLQQLPETE 194
Query: 249 DLXXXXXXXXXXXRARAFAKKLSDAPLAIVDKRRQGHNMSEVMHLI-GDVKGKVAIMVDD 307
+ R F K L P + K R+G ++ L G+ G ++VDD
Sbjct: 195 KVIVAFPDDGAWKR---FHKLLDHYPTVVCTKVREGDK--RIVRLKEGNPAGCHVVIVDD 249
Query: 308 MIDTAGTITSAAALLKQEGAEAVYACSTHAVFRFGSW 344
++ + GT+ +L GA V A TH VF SW
Sbjct: 250 LVQSGGTLIECQKVLAAHGAVKVSAYVTHGVFPKSSW 286
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,736,583
Number of extensions: 243602
Number of successful extensions: 556
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 549
Number of HSP's successfully gapped: 5
Length of query: 387
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 287
Effective length of database: 8,364,969
Effective search space: 2400746103
Effective search space used: 2400746103
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 113 (48.1 bits)