Os01g0723600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribose-phosphate pyrophosphokinase 3 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 3).
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Os01g0723600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribose-phosphate pyrophosphokinase 3 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 283.45 | 0.791 | 5.78 | -2.22 | 0.0797 | 1.26 | 1.65 | 1.07 | -0.122 | 20.9 | 1.057 | 292 | -- | -- |
| 284.39 | 0.785 | 5.78 | -2.22 | 0.0572 | 1.22 | 1.54 | -- | -0.115 | 19.9 | -0.4479 | 302 | -- | -- |
| 289.57 | 0.793 | 5.78 | -2.3 | 0.13 | 1.31 | -- | 0.711 | -0.157 | 8.98 | 8.18 | 380 | -- | -- |
| 289.72 | 0.793 | 5.78 | -2.28 | 0.225 | 1.48 | -- | -- | -0.16 | 6.03 | -51.72 | 416 | -- | -- |
| 290.16 | 0.793 | 5.78 | -2.3 | -- | 1.29 | -- | 0.554 | -0.151 | -- | 4.79 | 365 | -- | -- |
| 313.66 | 0.83 | 5.76 | -2.24 | 0.773 | -- | 0.309 | -- | -0.0404 | 15.2 | -- | -- | -- | -- |
| 313.9 | 0.83 | 5.76 | -2.24 | 0.772 | -- | -- | -- | -0.0389 | 15 | -- | -- | -- | -- |
| 290.63 | 0.794 | 5.78 | -2.3 | -- | 1.28 | -- | -- | -0.151 | -- | 3.474 | 363 | -- | -- |
| 430.06 | 0.966 | 5.72 | -- | 0.0315 | 1.24 | -- | -- | 0.114 | 6.65 | -38.2 | 357 | -- | -- |
| 348.04 | 0.872 | 5.76 | -2.27 | -- | -- | -- | -- | -0.059 | -- | -- | -- | -- | -- |
| 445.75 | 0.988 | 5.7 | -- | 0.816 | -- | -- | -- | 0.21 | 15.1 | -- | -- | -- | -- |
| 430.1 | 0.966 | 5.72 | -- | -- | 1.23 | -- | -- | 0.114 | -- | -33.88 | 355 | -- | -- |
| 483.92 | 1.03 | 5.7 | -- | -- | -- | -- | -- | 0.193 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 272.82 | precipitation | 1e-01 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 274.77 | precipitation | 1e-01 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 3 | 275.48 | wind | 9e+00 | 43200 | > th | dose dependent | rect. | 15 | 15 |
| 4 | 275.63 | wind | 9e+00 | 43200 | > th | dose dependent | rect. | 14 | 8 |
| 5 | 275.67 | precipitation | 1e-01 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 12 | 275.95 | wind | 9e+00 | 43200 | < th | dose independent | sin | 14 | NA |
| 17 | 276.06 | wind | 9e+00 | 43200 | > th | dose independent | sin | 14 | NA |
| 25 | 276.18 | wind | 9e+00 | 43200 | > th | dose dependent | sin | 15 | NA |
| 36 | 276.43 | wind | 7e+00 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 38 | 276.53 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 44 | 276.82 | wind | 9e+00 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 45 | 276.83 | wind | 9e+00 | 43200 | > th | dose independent | rect. | 14 | 8 |
| 48 | 276.92 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 14 | 15 |
| 54 | 277.01 | wind | 9e+00 | 43200 | > th | dose independent | rect. | 15 | 15 |
| 65 | 277.11 | wind | 7e+00 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 70 | 277.17 | wind | 7e+00 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 88 | 277.38 | wind | 7e+00 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 99 | 277.52 | wind | 9e+00 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 109 | 277.68 | wind | 9e+00 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 135 | 277.99 | radiation | 3e+01 | 720 | < th | dose independent | rect. | 18 | 17 |
| 139 | 278.04 | wind | 7e+00 | 43200 | > th | dose dependent | rect. | 12 | 17 |
| 147 | 278.10 | wind | 9e+00 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 180 | 278.34 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 17 | 12 |
| 191 | 278.38 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 201 | 278.41 | humidity | 6e+01 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 202 | 278.41 | wind | 7e+00 | 43200 | > th | dose dependent | rect. | 11 | 12 |
| 228 | 278.49 | wind | 9e+00 | 14400 | < th | dose independent | rect. | 20 | 7 |
| 271 | 278.71 | wind | 7e+00 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 272 | 278.71 | wind | 9e+00 | 14400 | < th | dose independent | rect. | 20 | 4 |
| 337 | 278.91 | wind | 9e+00 | 14400 | > th | dose dependent | rect. | 17 | 18 |
| 388 | 279.05 | wind | 5e+00 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 402 | 279.10 | wind | 9e+00 | 43200 | > th | dose independent | rect. | 12 | 11 |
| 426 | 279.13 | wind | 7e+00 | 43200 | > th | dose independent | rect. | 2 | 20 |
| 453 | 279.19 | wind | 7e+00 | 43200 | > th | dose independent | rect. | 11 | 22 |
| 461 | 279.22 | wind | 7e+00 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 470 | 279.24 | humidity | 6e+01 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 516 | 279.35 | wind | 7e+00 | 43200 | > th | dose dependent | rect. | 4 | 18 |
| 530 | 279.38 | wind | 7e+00 | 43200 | > th | dose independent | rect. | 8 | 21 |
| 532 | 279.38 | wind | 7e+00 | 43200 | > th | dose dependent | rect. | 1 | 21 |
| 534 | 279.39 | wind | 7e+00 | 43200 | > th | dose independent | rect. | 8 | 15 |
| 535 | 279.39 | wind | 7e+00 | 43200 | > th | dose independent | rect. | 6 | 17 |
| 549 | 279.41 | wind | 7e+00 | 43200 | > th | dose independent | rect. | 6 | 23 |
| 569 | 279.44 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 574 | 279.44 | wind | 7e+00 | 43200 | < th | dose independent | rect. | 2 | 21 |
| 580 | 279.45 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 597 | 279.46 | wind | 5e+00 | 14400 | > th | dose dependent | rect. | 20 | 2 |
| 609 | 279.47 | wind | 7e+00 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 651 | 279.53 | wind | 7e+00 | 43200 | > th | dose independent | no | NA | NA |
| 664 | 279.55 | radiation | 1e+01 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 672 | 279.55 | wind | 7e+00 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 784 | 279.71 | wind | 7e+00 | 43200 | > th | dose dependent | no | NA | NA |
| 804 | 279.73 | wind | 7e+00 | 43200 | < th | dose independent | rect. | 6 | 23 |
| 806 | 279.73 | wind | 7e+00 | 43200 | > th | dose dependent | rect. | 17 | 23 |
| 822 | 279.76 | wind | 7e+00 | 43200 | < th | dose independent | rect. | 6 | 17 |
| 838 | 279.78 | wind | 7e+00 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 844 | 279.79 | wind | 7e+00 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 860 | 279.82 | wind | 7e+00 | 43200 | > th | dose independent | rect. | 19 | 23 |
| 866 | 279.83 | radiation | 4e+01 | 720 | < th | dose dependent | rect. | 18 | 17 |
| 867 | 279.84 | wind | 7e+00 | 43200 | < th | dose independent | no | NA | NA |
| 946 | 279.99 | radiation | 2e+01 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 994 | 280.06 | precipitation | 1e-01 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 995 | 280.06 | precipitation | 1e-01 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 998 | 280.06 | precipitation | 1e-01 | 43200 | < th | dose dependent | rect. | 16 | 2 |