BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0605900 Os06g0605900|AK061949
(122 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0605900 Leucine-rich repeat, cysteine-containing subty... 243 2e-65
Os02g0200900 Leucine-rich repeat, cysteine-containing conta... 195 6e-51
>Os06g0605900 Leucine-rich repeat, cysteine-containing subtype containing protein
Length = 122
Score = 243 bits (621), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 DATVSALVKAHGSSLARLSLEGCSRITDASLFAISEGCTDLAELDLSNCMVSDYGVAVLA 60
DATVSALVKAHGSSLARLSLEGCSRITDASLFAISEGCTDLAELDLSNCMVSDYGVAVLA
Sbjct: 1 DATVSALVKAHGSSLARLSLEGCSRITDASLFAISEGCTDLAELDLSNCMVSDYGVAVLA 60
Query: 61 SARQLKLRVLSLSGCLKVTQKSVPFLGSMSASLEGLNLQFNFIGNHNIASLEKQLWWCDI 120
SARQLKLRVLSLSGCLKVTQKSVPFLGSMSASLEGLNLQFNFIGNHNIASLEKQLWWCDI
Sbjct: 61 SARQLKLRVLSLSGCLKVTQKSVPFLGSMSASLEGLNLQFNFIGNHNIASLEKQLWWCDI 120
Query: 121 LA 122
LA
Sbjct: 121 LA 122
>Os02g0200900 Leucine-rich repeat, cysteine-containing containing protein
Length = 511
Score = 195 bits (495), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 100/123 (81%), Positives = 106/123 (86%), Gaps = 1/123 (0%)
Query: 1 DATVSALVKAHGSSLARLSLEGCSRITDASLFAISEGCTDLAELDLSNCMVSDYGVAVLA 60
DA VS LVK HG SL ++SLEGCS+ITDASLFAISE CT+LAELDLS CMVSD GVA LA
Sbjct: 389 DAAVSTLVKGHGKSLKQVSLEGCSKITDASLFAISENCTELAELDLSKCMVSDNGVATLA 448
Query: 61 SARQLKLRVLSLSGCLKVTQKSVPFLGSMSASLEGLNLQF-NFIGNHNIASLEKQLWWCD 119
SA+ LKLRVLSLSGC KVT KSV FLG+M SLEGLNLQF N IGNHNIASLEKQLWWCD
Sbjct: 449 SAKHLKLRVLSLSGCSKVTPKSVSFLGNMGQSLEGLNLQFCNMIGNHNIASLEKQLWWCD 508
Query: 120 ILA 122
ILA
Sbjct: 509 ILA 511
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.131 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,061,691
Number of extensions: 87990
Number of successful extensions: 502
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 503
Number of HSP's successfully gapped: 2
Length of query: 122
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 34
Effective length of database: 12,440,969
Effective search space: 422992946
Effective search space used: 422992946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)