Os06g0605900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, cysteine-containing subtype containing protein.
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Os06g0605900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, cysteine-containing subtype containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 158.87 | 0.592 | 14.4 | 1.38 | 1.36 | 1.73 | 0.807 | 0.946 | 0.507 | 1.52 | 76.99 | 1383 | -- | -- |
| 159.35 | 0.588 | 14.4 | 1.47 | 1.42 | 1.79 | 0.749 | -- | 0.524 | 1.51 | 76 | 1335 | -- | -- |
| 161.09 | 0.591 | 14.4 | 1.34 | 1.41 | 1.74 | -- | 0.898 | 0.493 | 1.57 | 76.67 | 1343 | -- | -- |
| 161.31 | 0.592 | 14.4 | 1.45 | 1.52 | 1.85 | -- | -- | 0.524 | 1.47 | 76.25 | 1262 | -- | -- |
| 219.23 | 0.693 | 14.4 | 1.42 | -- | 0.88 | -- | 0.593 | 0.407 | -- | 78 | 1660 | -- | -- |
| 207.32 | 0.675 | 14.4 | 1.32 | 1.27 | -- | 0.563 | -- | 0.411 | 1.36 | -- | -- | -- | -- |
| 208.57 | 0.676 | 14.4 | 1.3 | 1.27 | -- | -- | -- | 0.408 | 1.44 | -- | -- | -- | -- |
| 221.46 | 0.696 | 14.4 | 1.44 | -- | 0.883 | -- | -- | 0.413 | -- | 78 | 1660 | -- | -- |
| 206.13 | 0.669 | 14.4 | -- | 1.51 | 1.79 | -- | -- | 0.546 | 1.46 | 82 | 2651 | -- | -- |
| 307.57 | 0.819 | 14.4 | 1.35 | -- | -- | -- | -- | 0.435 | -- | -- | -- | -- | -- |
| 253.35 | 0.745 | 14.4 | -- | 1.29 | -- | -- | -- | 0.262 | 1.47 | -- | -- | -- | -- |
| 263.4 | 0.758 | 14.4 | -- | -- | 0.903 | -- | -- | 0.275 | -- | 82 | 2651 | -- | -- |
| 355.91 | 0.881 | 14.4 | -- | -- | -- | -- | -- | 0.284 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 149.55 | temperature | 30.0 | 720 | < th | dose independent | rect. | 16 | 13 |
| 2 | 150.17 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 2 |
| 4 | 150.54 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 17 | 3 |
| 6 | 151.61 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 10 |
| 7 | 151.85 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 5 |
| 31 | 154.05 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 14 |
| 39 | 155.21 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 13 |
| 45 | 155.42 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 4 |
| 50 | 155.59 | humidity | 80.0 | 720 | > th | dose independent | rect. | 19 | 1 |
| 58 | 156.26 | humidity | 50.0 | 720 | > th | dose dependent | sin | 16 | NA |
| 118 | 158.71 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 11 | 16 |
| 141 | 159.37 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 9 | 19 |
| 147 | 159.48 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 21 |
| 149 | 159.55 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 150 | 159.57 | temperature | 30.0 | 720 | < th | dose independent | sin | 13 | NA |
| 159 | 159.71 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 11 | 10 |
| 165 | 159.80 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 15 |
| 168 | 159.83 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 15 |
| 170 | 159.87 | humidity | 80.0 | 720 | < th | dose dependent | sin | 13 | NA |
| 172 | 159.91 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 9 | 12 |
| 183 | 160.07 | humidity | 70.0 | 720 | > th | dose independent | sin | 14 | NA |
| 199 | 160.31 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 8 | 15 |
| 235 | 160.65 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 287 | 161.15 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 306 | 161.24 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 14 | 19 |
| 310 | 161.26 | temperature | 30.0 | 720 | < th | dose independent | rect. | 16 | 18 |
| 332 | 161.44 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 333 | 161.45 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 15 |
| 334 | 161.46 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 9 |
| 342 | 161.47 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 7 |
| 349 | 161.48 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 369 | 161.50 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 14 | 10 |
| 374 | 161.58 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 437 | 161.90 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 443 | 161.93 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 477 | 162.05 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 14 | 4 |
| 517 | 162.13 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 13 | 21 |
| 539 | 162.21 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 554 | 162.26 | temperature | 30.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 557 | 162.27 | temperature | 30.0 | 14400 | > th | dose independent | sin | 13 | NA |
| 559 | 162.27 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 634 | 162.43 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 14 | 14 |
| 647 | 162.45 | temperature | 30.0 | 14400 | > th | dose dependent | sin | 13 | NA |
| 659 | 162.47 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 13 | 11 |
| 724 | 162.54 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 813 | 162.68 | humidity | 70.0 | 720 | < th | dose independent | rect. | 14 | 17 |
| 817 | 162.69 | humidity | 70.0 | 720 | < th | dose independent | rect. | 14 | 6 |
| 929 | 162.81 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 19 |