BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0605900 Os06g0605900|AK061949
(122 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G25490.1 | chr2:10848018-10850275 REVERSE LENGTH=629 100 3e-22
AT5G25350.1 | chr5:8794842-8796882 REVERSE LENGTH=624 94 1e-20
AT1G21410.1 | chr1:7497479-7499386 FORWARD LENGTH=361 57 2e-09
AT1G77000.1 | chr1:28940888-28942401 FORWARD LENGTH=361 53 4e-08
AT5G23340.1 | chr5:7856314-7857983 FORWARD LENGTH=406 50 4e-07
>AT2G25490.1 | chr2:10848018-10850275 REVERSE LENGTH=629
Length = 628
Score = 99.8 bits (247), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 84/123 (68%), Gaps = 1/123 (0%)
Query: 1 DATVSALVKAHGSSLARLSLEGCSRITDASLFAISEGCTDLAELDLSNCMVSDYGVAVLA 60
D +SA+ +G +L L+++GCS ITDASL +I+ C L++LD+S C +SD G+ LA
Sbjct: 506 DRVISAITARNGWTLEVLNIDGCSNITDASLVSIAANCQILSDLDISKCAISDSGIQALA 565
Query: 61 SARQLKLRVLSLSGCLKVTQKSVPFLGSMSASLEGLNL-QFNFIGNHNIASLEKQLWWCD 119
S+ +LKL++LS++GC VT KS+P + + ++L GLNL Q I N + L ++L+ CD
Sbjct: 566 SSDKLKLQILSVAGCSMVTDKSLPAIVGLGSTLLGLNLQQCRSISNSTVDFLVERLYKCD 625
Query: 120 ILA 122
IL+
Sbjct: 626 ILS 628
Score = 45.1 bits (105), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 14 SLARLSLEGCSRITDASLFAISEGCTDLAELDLSNC-MVSDYGVAVLASARQLKLRVLSL 72
+L L+LE CSRI D L AI+ C+ L + + NC +V D G+A L S L L L
Sbjct: 230 NLTELTLEACSRIGDEGLLAIARSCSKLKSVSIKNCPLVRDQGIASLLSNTTCSLAKLKL 289
Query: 73 SGCLKVTQKSVPFLGSMSASLEGLNL 98
L VT S+ +G S+ L L
Sbjct: 290 Q-MLNVTDVSLAVVGHYGLSITDLVL 314
>AT5G25350.1 | chr5:8794842-8796882 REVERSE LENGTH=624
Length = 623
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 79/123 (64%), Gaps = 2/123 (1%)
Query: 1 DATVSALVKAHGSSLARLSLEGCSRITDASLFAISEGCTDLAELDLSNCMVSDYGVAVLA 60
D TVSA+ HG +L L+L+GC IT+ASL A+++ C + +LD+SN +VSD+G+ LA
Sbjct: 500 DNTVSAISVCHGRTLESLNLDGCKNITNASLVAVAKNCYSVNDLDISNTLVSDHGIKALA 559
Query: 61 SA-RQLKLRVLSLSGCLKVTQKSVPFLGSMSASLEGLNLQF-NFIGNHNIASLEKQLWWC 118
S+ L L+VLS+ GC +T KS + + +L GLN+Q I + + +L + LW C
Sbjct: 560 SSPNHLNLQVLSIGGCSSITDKSKACIQKLGRTLLGLNIQRCGRISSSTVDTLLENLWRC 619
Query: 119 DIL 121
DIL
Sbjct: 620 DIL 622
>AT1G21410.1 | chr1:7497479-7499386 FORWARD LENGTH=361
Length = 360
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 1 DATVSALVKAHGSSLARLSLEGCSRITDASLFAISEGCTDLAELDLSNCM-VSDYGVAVL 59
D V A+ H L L L +ITD SL+A++ GC DL +L+LS C SD +A L
Sbjct: 106 DNAVEAIAN-HCHELQELDLSKSLKITDRSLYALAHGCPDLTKLNLSGCTSFSDTAIAYL 164
Query: 60 ASARQLKLRVLSLSGCLK-VTQKSVPFLGSMSASLEGLNL 98
+ KL+VL+L GC+K VT ++ +G+ ++ LNL
Sbjct: 165 TRFCR-KLKVLNLCGCVKAVTDNALEAIGNNCNQMQSLNL 203
>AT1G77000.1 | chr1:28940888-28942401 FORWARD LENGTH=361
Length = 360
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 1 DATVSALVKAHGSSLARLSLEGCSRITDASLFAISEGCTDLAELDLSNCM-VSDYGVAVL 59
D V A+ H L L L S+ITD SL++++ GCT+L +L+LS C SD +A L
Sbjct: 106 DNAVEAIAN-HCHELQDLDLSKSSKITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHL 164
Query: 60 ASARQLKLRVLSLSGCLK-VTQKSVPFLGSMSASLEGLNL 98
+ KL++L+L GC++ V+ ++ +G L+ LNL
Sbjct: 165 TRFCR-KLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNL 203
>AT5G23340.1 | chr5:7856314-7857983 FORWARD LENGTH=406
Length = 405
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 15 LARLSLEGCSRITDASLFAISEGCTDLAELDLSNCM-VSDYGVAVLASARQLKLRVLSLS 73
L L L+GC+ ITD+ L + +GC + LD++ C V D GV+ +A A L+ L L
Sbjct: 178 LEALGLQGCTNITDSGLADLVKGCRKIKSLDINKCSNVGDAGVSSVAKACASSLKTLKLL 237
Query: 74 GCLKVTQKSVPFLGSMSASLEGL 96
C KV +S+ L +LE L
Sbjct: 238 DCYKVGNESISSLAQFCKNLETL 260
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.131 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,051,776
Number of extensions: 61610
Number of successful extensions: 403
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 18
Length of query: 122
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 36
Effective length of database: 8,748,793
Effective search space: 314956548
Effective search space used: 314956548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 105 (45.1 bits)