BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0595900 Os06g0595900|AK066655
(629 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0595900 Transcription elongation factor S-II, central ... 1274 0.0
Os02g0208600 Transcription elongation factor S-II, central ... 704 0.0
AK105113 506 e-143
>Os06g0595900 Transcription elongation factor S-II, central region domain
containing protein
Length = 629
Score = 1274 bits (3297), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 629/629 (100%), Positives = 629/629 (100%)
Query: 1 QFGIKHVDQDELLQGHGLCWSSDVVGASETISQSDPDRVRKSDIDEGVDVSLIEHESKRI 60
QFGIKHVDQDELLQGHGLCWSSDVVGASETISQSDPDRVRKSDIDEGVDVSLIEHESKRI
Sbjct: 1 QFGIKHVDQDELLQGHGLCWSSDVVGASETISQSDPDRVRKSDIDEGVDVSLIEHESKRI 60
Query: 61 KTDDGAAEEKKSVTQKAQILAFEIEGELFTLLGGVNKKYKEKGRSLLFNLKDKSNPVLRG 120
KTDDGAAEEKKSVTQKAQILAFEIEGELFTLLGGVNKKYKEKGRSLLFNLKDKSNPVLRG
Sbjct: 61 KTDDGAAEEKKSVTQKAQILAFEIEGELFTLLGGVNKKYKEKGRSLLFNLKDKSNPVLRG 120
Query: 121 RVLSGDITPKRLCSMTTEELASKELSDWRLAKAEELAKMVVLPSKEVDVRRLVRKTHKGE 180
RVLSGDITPKRLCSMTTEELASKELSDWRLAKAEELAKMVVLPSKEVDVRRLVRKTHKGE
Sbjct: 121 RVLSGDITPKRLCSMTTEELASKELSDWRLAKAEELAKMVVLPSKEVDVRRLVRKTHKGE 180
Query: 181 FQVEVEETDGISVEVGIGGDLLSHVPSRPTEGQTKTDDKSVHTEEKESDNSEQDGVIVTG 240
FQVEVEETDGISVEVGIGGDLLSHVPSRPTEGQTKTDDKSVHTEEKESDNSEQDGVIVTG
Sbjct: 181 FQVEVEETDGISVEVGIGGDLLSHVPSRPTEGQTKTDDKSVHTEEKESDNSEQDGVIVTG 240
Query: 241 GNNMPSNLEHTENEKTDLMQELMVDDLKDTENLPPIMSLDEFMETLDSEPPFEDDSTQTV 300
GNNMPSNLEHTENEKTDLMQELMVDDLKDTENLPPIMSLDEFMETLDSEPPFEDDSTQTV
Sbjct: 241 GNNMPSNLEHTENEKTDLMQELMVDDLKDTENLPPIMSLDEFMETLDSEPPFEDDSTQTV 300
Query: 301 KDDPNSIEKTDISLKSEDSSKNVDSASASDSQLDPQTLSPQDKFESKLQSPKKDAGSILF 360
KDDPNSIEKTDISLKSEDSSKNVDSASASDSQLDPQTLSPQDKFESKLQSPKKDAGSILF
Sbjct: 301 KDDPNSIEKTDISLKSEDSSKNVDSASASDSQLDPQTLSPQDKFESKLQSPKKDAGSILF 360
Query: 361 PVEQIKEDLLVKSSPEKANAENIDTGSQSIPESITDCKSAPDALLTHDSVWEGTIQLSLS 420
PVEQIKEDLLVKSSPEKANAENIDTGSQSIPESITDCKSAPDALLTHDSVWEGTIQLSLS
Sbjct: 361 PVEQIKEDLLVKSSPEKANAENIDTGSQSIPESITDCKSAPDALLTHDSVWEGTIQLSLS 420
Query: 421 SLTNVVAIFKSGEKTSTNEWRHFLDIKGRVRLSAFQEFLEQLPKSRSRAIMVTELRWKEG 480
SLTNVVAIFKSGEKTSTNEWRHFLDIKGRVRLSAFQEFLEQLPKSRSRAIMVTELRWKEG
Sbjct: 421 SLTNVVAIFKSGEKTSTNEWRHFLDIKGRVRLSAFQEFLEQLPKSRSRAIMVTELRWKEG 480
Query: 481 SLESGRQHLLRTIDSYIADERVGLVKPADGVELYLCPSQGKAAQILAEHLPKEQSSSLTV 540
SLESGRQHLLRTIDSYIADERVGLVKPADGVELYLCPSQGKAAQILAEHLPKEQSSSLTV
Sbjct: 481 SLESGRQHLLRTIDSYIADERVGLVKPADGVELYLCPSQGKAAQILAEHLPKEQSSSLTV 540
Query: 541 TGTSAIGVVVWRRPHVSPRIPARNDGSRNQSISRKQHAVIASAVPLSSKPTNERQHHGQD 600
TGTSAIGVVVWRRPHVSPRIPARNDGSRNQSISRKQHAVIASAVPLSSKPTNERQHHGQD
Sbjct: 541 TGTSAIGVVVWRRPHVSPRIPARNDGSRNQSISRKQHAVIASAVPLSSKPTNERQHHGQD 600
Query: 601 VVTDDVPPGFGPGVVREDDDLPEYDFVTV 629
VVTDDVPPGFGPGVVREDDDLPEYDFVTV
Sbjct: 601 VVTDDVPPGFGPGVVREDDDLPEYDFVTV 629
>Os02g0208600 Transcription elongation factor S-II, central region domain
containing protein
Length = 913
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/653 (59%), Positives = 468/653 (71%), Gaps = 36/653 (5%)
Query: 2 FGIKHVDQDELLQGHGLCWSSDV-VGASETISQSDPDRVRKSDIDEGVDVSLIEHESKRI 60
G V DELLQGHGLCW SD G E +Q + R R SDID V +L E ESKR+
Sbjct: 267 LGQYTVVADELLQGHGLCWVSDFDAGVPEPATQPNLKRSRASDIDPVVADTLSESESKRM 326
Query: 61 KT-DDGAAEEKKSVTQKAQILAFEIEGELFTLLGGVNKKYKEKGRSLLFNLKDKSNPVLR 119
K+ +D A +K S+ QKA LA +E ELF L GGVNKKYKEKGRSLLFNLKDKSNP LR
Sbjct: 327 KSANDEEAIDKDSIIQKADDLAVRVEEELFKLFGGVNKKYKEKGRSLLFNLKDKSNPELR 386
Query: 120 GRVLSGDITPKRLCSMTTEELASKELSDWRLAKAEELAKMVVLPSKEVDVRRLVRKTHKG 179
RVLSGDITP RLCSMT EELASKELS+WRLAKAEELA+MVVLPS EVDVRRLVRKTHKG
Sbjct: 387 ERVLSGDITPDRLCSMTAEELASKELSEWRLAKAEELAQMVVLPSTEVDVRRLVRKTHKG 446
Query: 180 EFQVEVEETDGISVEVGIGGDLLSHVPSRPTEGQTKTDDK-------SVHTEEKESDNSE 232
EFQVEVEETDGISVEV +GG+LL+ VPS+ E QTK+DDK + +K D +
Sbjct: 447 EFQVEVEETDGISVEVELGGNLLTQVPSKAPEDQTKSDDKESTDDKTGIQDNDKAPDGTS 506
Query: 233 QDGVIVTGGNNMPSNLEHTENEKTDLMQELMVDDLKDTENLPPIMSLDEFMETLDSEPPF 292
QD G N+ +LE+ +NEK+DLMQELMVDDLKDTENLPPI SLDEFM+ LDSEPPF
Sbjct: 507 QDEDNGAGKNDPQDDLEYVDNEKSDLMQELMVDDLKDTENLPPIPSLDEFMQGLDSEPPF 566
Query: 293 EDDSTQTVKDDPNSIEKTDISLKSEDSSKNVDSASASDSQLDPQTL-SPQDKFESKLQSP 351
E+ S T ++D + ++ D + +S + + SA++ + L S QDK ESKL+SP
Sbjct: 567 ENLSAGTPEEDSDDRDEADTTAESAELPEEEVKVSAAEKIVSEADLPSSQDKSESKLESP 626
Query: 352 KKDAGSILFPVEQIKEDLLVKSSPEKANAENIDTGSQSIPESITDCKSAPDALLT----- 406
K + GS L PVEQ +E L+KSSP+ + Q+ E++ + S + T
Sbjct: 627 KDEVGSNLGPVEQ-REGKLIKSSPDSVEVK------QTTTENVLNRDSTVHNMATTLPMI 679
Query: 407 HDSVWEGTIQLSLSSLTNVVAIFKSGEKTSTNEWRHFLDIKGRVRLSAFQEFLEQLPKSR 466
+S+WEG IQL++SSLTNVVAIFKSGEK EWR F++IKGRV+LSAFQEF+EQLPKSR
Sbjct: 680 RESIWEGAIQLTMSSLTNVVAIFKSGEKPPVKEWRSFVEIKGRVKLSAFQEFVEQLPKSR 739
Query: 467 SRAIMVTELRWKEGSLESGRQHLLRTIDSYIADERVGLVKPADGVELYLCPSQGKAAQIL 526
SRAIMVTEL WKEGS ESGRQHLL+TIDSYI+DERVGL +PADG+ELYLCPSQGK +IL
Sbjct: 740 SRAIMVTELCWKEGSHESGRQHLLQTIDSYISDERVGLAEPADGIELYLCPSQGKTVEIL 799
Query: 527 AEHLPKEQSSSLTVTGTSAIGVVVWRRPHVSPRIPA--RNDGSRNQSISRKQHAVIASAV 584
+ HLPKE SL V+ +S IGV+VWRRP+V PR+PA R+DGSR SI +K ++
Sbjct: 800 SRHLPKEHLESLAVSASSIIGVIVWRRPNV-PRMPAHPRHDGSRRPSILKKPQVTGSTPG 858
Query: 585 PLSSKPTN----------ERQHHGQDVVTDDVPPGFGPGVVREDDDLPEYDFV 627
P S P + +R H +D VTDDVPPGFGPGV R++DDLPE++FV
Sbjct: 859 PRPSLPMSSHGAPPGFPVQRHRHEED-VTDDVPPGFGPGVARDEDDLPEFNFV 910
>AK105113
Length = 494
Score = 506 bits (1302), Expect = e-143, Method: Compositional matrix adjust.
Identities = 286/470 (60%), Positives = 342/470 (72%), Gaps = 21/470 (4%)
Query: 38 RVRKSDIDEGVDVSLIEHESKRIKT-DDGAAEEKKSVTQKAQILAFEIEGELFTLLGGVN 96
R R SDID V +L E ESKR+K+ +D A +K S+ QKA LA +E ELF L GGVN
Sbjct: 30 RSRASDIDPVVADTLSESESKRMKSANDEEAIDKDSIIQKADDLAVRVEEELFKLFGGVN 89
Query: 97 KKYKEKGRSLLFNLKDKSNPVLRGRVLSGDITPKRLCSMTTEELASKELSDWRLAKAEEL 156
KKYKEKGRSLLFNLKDKSNP LR RVLSGDITP RLCSMT EELASKELS+WRLAKAEEL
Sbjct: 90 KKYKEKGRSLLFNLKDKSNPELRERVLSGDITPDRLCSMTAEELASKELSEWRLAKAEEL 149
Query: 157 AKMVVLPSKEVDVRRLVRKTHKGEFQVEVEETDGISVEVGIGGDLLSHVPSRPTEGQTKT 216
A+MVVLPS EVDVRRLVRKTHKGEFQVEVEETDGISVEV +GG+LL+ VPS+ E QTK+
Sbjct: 150 AQMVVLPSTEVDVRRLVRKTHKGEFQVEVEETDGISVEVELGGNLLTQVPSKAPEDQTKS 209
Query: 217 DDK-------SVHTEEKESDNSEQDGVIVTGGNNMPSNLEHTENEKTDLMQELMVDDLKD 269
DDK + +K D + QD G N+ +LE+ +NEK+DLMQELMVDDLKD
Sbjct: 210 DDKESTDDKTGIQDNDKAPDGTSQDEDNGAGKNDPQDDLEYVDNEKSDLMQELMVDDLKD 269
Query: 270 TENLPPIMSLDEFMETLDSEPPFEDDSTQTVKDDPNSIEKTDISLKSEDSSKNVDSASAS 329
TENLPPI SLDEFM+ LDSEPPFE+ S T ++D + ++ D + +S + + SA+
Sbjct: 270 TENLPPIPSLDEFMQGLDSEPPFENLSAGTPEEDSDDRDEADTTAESAELPEEEVKVSAA 329
Query: 330 DSQLDPQTL-SPQDKFESKLQSPKKDAGSILFPVEQIKEDLLVKSSPEKANAENIDTGSQ 388
+ + L S QDK ESKL+SPK + GS L PVEQ +E L+KSSP+ + Q
Sbjct: 330 EKIVSEADLPSSQDKSESKLESPKDEVGSNLGPVEQ-REGKLIKSSPDSVEVK------Q 382
Query: 389 SIPESITDCKSAPDALLT-----HDSVWEGTIQLSLSSLTNVVAIFKSGEKTSTNEWRHF 443
+ E++ + S + T +S+WEG IQL++SSLTNVVAIFKSGEK EWR F
Sbjct: 383 TTTENVLNRDSTVHNMATTLPMIRESIWEGAIQLTMSSLTNVVAIFKSGEKPPVKEWRSF 442
Query: 444 LDIKGRVRLSAFQEFLEQLPKSRSRAIMVTELRWKEGSLESGRQHLLRTI 493
++IKGRV+LSAFQEF+EQLPKSRSRAIMVTEL WKEGS ESGRQHLL+
Sbjct: 443 VEIKGRVKLSAFQEFVEQLPKSRSRAIMVTELCWKEGSHESGRQHLLQVF 492
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.309 0.129 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,279,336
Number of extensions: 978250
Number of successful extensions: 2826
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2817
Number of HSP's successfully gapped: 3
Length of query: 629
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 522
Effective length of database: 11,448,903
Effective search space: 5976327366
Effective search space used: 5976327366
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 159 (65.9 bits)