Os06g0595900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription elongation factor S-II, central region domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0595900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Transcription elongation factor S-II, central region domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 191.21 | 0.65 | 3.77 | -0.57 | 0.934 | -0.0174 | -1.52 | 7.81 | -0.0354 | 19.8 | 30.71 | 4053 | -- | -- |
| 193.14 | 0.647 | 3.9 | -1.75 | 0.918 | 0.995 | -1.33 | -- | -0.00764 | 19.8 | 32.1 | 3982 | -- | -- |
| 197.28 | 0.654 | 3.77 | -0.532 | 0.934 | -0.0214 | -- | 8 | -0.0295 | 19.9 | 31.2 | 4002 | -- | -- |
| 199.83 | 0.658 | 3.91 | -1.73 | 0.918 | 1 | -- | -- | -0.0309 | 19.9 | 32 | 4006 | -- | -- |
| 243.93 | 0.727 | 3.74 | -0.532 | -- | -0.0202 | -- | 8.37 | -0.0278 | -- | 31.81 | 3980 | -- | -- |
| 223.79 | 0.701 | 3.95 | -1.54 | 0.935 | -- | -1.45 | -- | -0.187 | 20 | -- | -- | -- | -- |
| 229.85 | 0.71 | 3.95 | -1.5 | 0.933 | -- | -- | -- | -0.189 | 20.3 | -- | -- | -- | -- |
| 245.18 | 0.729 | 3.89 | -1.74 | -- | 1.04 | -- | -- | -0.0371 | -- | 32.02 | 3980 | -- | -- |
| 276.35 | 0.774 | 3.85 | -- | 0.911 | 0.847 | -- | -- | 0.183 | 19.9 | 32.1 | 4022 | -- | -- |
| 278.04 | 0.779 | 3.92 | -1.51 | -- | -- | -- | -- | -0.2 | -- | -- | -- | -- | -- |
| 289.31 | 0.796 | 3.91 | -- | 0.94 | -- | -- | -- | -0.0222 | 20.2 | -- | -- | -- | -- |
| 322.13 | 0.836 | 3.85 | -- | -- | 0.708 | -- | -- | 0.11 | -- | 32.1 | 3974 | -- | -- |
| 338.03 | 0.858 | 3.88 | -- | -- | -- | -- | -- | -0.0324 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 186.33 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 2 | 186.50 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 3 | 186.57 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 4 | 186.75 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 7 |
| 6 | 186.81 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 7 | 186.89 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 7 |
| 16 | 187.65 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 27 | 188.26 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 28 | 188.29 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 29 | 188.34 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 34 | 188.49 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 62 | 189.01 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 64 | 189.01 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 65 | 189.02 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 84 | 189.21 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 85 | 189.21 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 87 | 189.22 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 88 | 189.22 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 90 | 189.22 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 98 | 189.35 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 101 | 189.37 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 140 | 189.61 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 156 | 189.78 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 8 | 3 |
| 157 | 189.79 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 6 | 5 |
| 165 | 189.83 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 186 | 189.95 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 8 | 13 |
| 187 | 189.96 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 188 | 189.96 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 8 |
| 191 | 189.97 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 6 |
| 203 | 189.98 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 232 | 190.04 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 8 | 13 |
| 247 | 190.08 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 248 | 190.08 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 250 | 190.08 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 3 | 5 |
| 269 | 190.13 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 8 | 9 |
| 283 | 190.15 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 285 | 190.16 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 1 | 10 |
| 294 | 190.17 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 19 | 16 |
| 296 | 190.17 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 299 | 190.18 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 304 | 190.19 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 306 | 190.19 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 353 | 190.25 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 360 | 190.26 | atmosphere | 1000.0 | 43200 | < th | dose independent | sin | 23 | NA |
| 362 | 190.26 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 23 | 12 |
| 413 | 190.34 | atmosphere | 1000.0 | 43200 | > th | dose independent | sin | 23 | NA |
| 459 | 190.38 | atmosphere | 1000.0 | 43200 | < th | dose dependent | sin | 4 | NA |
| 494 | 190.44 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 8 | 3 |
| 543 | 190.47 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 22 | 17 |
| 546 | 190.48 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 570 | 190.50 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 6 | 18 |
| 681 | 190.61 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 791 | 190.68 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 7 |
| 831 | 190.70 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 5 |
| 838 | 190.70 | atmosphere | 1000.0 | 43200 | < th | dose dependent | no | NA | NA |
| 839 | 190.70 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 846 | 190.70 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 14 | 23 |
| 884 | 190.73 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 965 | 190.78 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 978 | 190.79 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 14 |