Os02g0208600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription elongation factor S-II, central region domain containing protein.
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Os02g0208600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription elongation factor S-II, central region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.5 | 0.246 | 10.8 | 0.403 | 0.484 | -0.525 | -0.697 | 2.24 | 0.0688 | 18.7 | 25.7 | 214 | -- | -- |
| 28.99 | 0.251 | 10.8 | 0.21 | 0.47 | -0.303 | -0.731 | -- | 0.0153 | 18.9 | 26.12 | 252 | -- | -- |
| 28.4 | 0.248 | 10.8 | 0.394 | 0.457 | -0.559 | -- | 2.13 | 0.0523 | 18.6 | 26.2 | 164 | -- | -- |
| 29.21 | 0.252 | 10.8 | 0.165 | 0.479 | -0.367 | -- | -- | 0.00131 | 18.9 | 26.34 | 256 | -- | -- |
| 36.41 | 0.283 | 10.8 | 0.313 | -- | -0.357 | -- | 2.19 | 0.0276 | -- | 26.7 | 11 | -- | -- |
| 30.38 | 0.258 | 10.8 | 0.0993 | 0.36 | -- | -0.579 | -- | -0.0075 | 19.7 | -- | -- | -- | -- |
| 31.32 | 0.262 | 10.8 | 0.113 | 0.359 | -- | -- | -- | -0.00853 | 19.8 | -- | -- | -- | -- |
| 37.49 | 0.285 | 10.8 | 0.0722 | -- | 0.171 | -- | -- | -0.03 | -- | 24.32 | 699 | -- | -- |
| 29.89 | 0.255 | 10.8 | -- | 0.451 | -0.327 | -- | -- | -0.0226 | 19.1 | 26.75 | 236 | -- | -- |
| 38.32 | 0.289 | 10.8 | 0.109 | -- | -- | -- | -- | -0.0135 | -- | -- | -- | -- | -- |
| 31.66 | 0.263 | 10.8 | -- | 0.359 | -- | -- | -- | -0.0212 | 19.8 | -- | -- | -- | -- |
| 37.62 | 0.286 | 10.8 | -- | -- | 0.185 | -- | -- | -0.0391 | -- | 24.36 | 714 | -- | -- |
| 38.64 | 0.29 | 10.8 | -- | -- | -- | -- | -- | -0.0256 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.97 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 8 |
| 4 | 25.14 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 17 |
| 26 | 25.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 29 | 25.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 45 | 25.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 50 | 25.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 2 |
| 80 | 25.96 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 5 |
| 90 | 25.99 | temperature | 25 | 270 | < th | dose independent | rect. | 5 | 7 |
| 107 | 26.03 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 12 |
| 113 | 26.06 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 11 |
| 133 | 26.13 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 10 |
| 162 | 26.21 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 167 | 26.22 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 20 |
| 182 | 26.25 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 15 |
| 190 | 26.28 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 2 |
| 191 | 26.28 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 232 | 26.34 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 18 |
| 236 | 26.35 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 7 |
| 238 | 26.35 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 9 |
| 264 | 26.39 | temperature | 15 | 270 | > th | dose dependent | sin | 1 | NA |
| 282 | 26.40 | temperature | 10 | 10 | > th | dose dependent | rect. | 12 | 10 |
| 351 | 26.49 | temperature | 15 | 720 | > th | dose dependent | sin | 6 | NA |
| 439 | 26.58 | temperature | 20 | 720 | > th | dose independent | sin | 6 | NA |
| 441 | 26.58 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 13 |
| 447 | 26.59 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 7 |
| 449 | 26.59 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 11 |
| 470 | 26.61 | temperature | 25 | 720 | < th | dose dependent | sin | 6 | NA |
| 501 | 26.64 | wind | 3 | 30 | > th | dose independent | rect. | 12 | 10 |
| 512 | 26.65 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 526 | 26.66 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 12 |
| 594 | 26.73 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 10 | 10 |
| 624 | 26.75 | temperature | 30 | 10 | < th | dose independent | rect. | 6 | 21 |
| 635 | 26.75 | radiation | 10 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 638 | 26.75 | radiation | 10 | 10 | < th | dose dependent | rect. | 3 | 15 |
| 662 | 26.77 | radiation | 10 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 682 | 26.79 | radiation | 10 | 10 | < th | dose dependent | rect. | 3 | 13 |
| 690 | 26.80 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 705 | 26.81 | radiation | 10 | 10 | < th | dose dependent | sin | 2 | NA |
| 728 | 26.82 | radiation | 10 | 10 | < th | dose dependent | rect. | 3 | 11 |
| 742 | 26.83 | wind | 1 | 30 | > th | dose dependent | rect. | 12 | 10 |
| 747 | 26.84 | wind | 5 | 90 | < th | dose independent | rect. | 17 | 10 |
| 845 | 26.92 | radiation | 1 | 90 | < th | dose independent | rect. | 3 | 12 |
| 849 | 26.92 | radiation | 20 | 10 | < th | dose dependent | rect. | 3 | 6 |
| 889 | 26.94 | wind | 1 | 30 | > th | dose dependent | rect. | 12 | 18 |
| 891 | 26.95 | temperature | 30 | 90 | < th | dose independent | rect. | 21 | 15 |
| 897 | 26.95 | radiation | 10 | 10 | < th | dose dependent | rect. | 3 | 9 |
| 905 | 26.96 | atmosphere | 995 | 270 | > th | dose independent | rect. | 5 | 20 |
| 946 | 26.99 | radiation | 10 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 958 | 27.00 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 12 | 10 |
| 996 | 27.03 | temperature | 30 | 10 | < th | dose independent | rect. | 22 | 14 |
| 999 | 27.03 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 3 | 17 |