BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0588900 Os06g0588900|AK071741
         (386 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0588900  Lissencephaly type-1-like homology motif domai...   764   0.0  
Os05g0160100  Lissencephaly type-1-like homology motif domai...   120   2e-27

>Os06g0588900 Lissencephaly type-1-like homology motif domain containing protein
          Length = 386

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/386 (96%), Positives = 371/386 (96%)

Query: 1   MELDSLREAFDRVIEKRASSSAKAQEVIDQIVSEVEQAITKMQMMNTDSMGTADHSSIXX 60
           MELDSLREAFDRVIEKRASSSAKAQEVIDQIVSEVEQAITKMQMMNTDSMGTADHSSI  
Sbjct: 1   MELDSLREAFDRVIEKRASSSAKAQEVIDQIVSEVEQAITKMQMMNTDSMGTADHSSILA 60

Query: 61  XXXXXXXXXXXXXQLEGCQKELNVALSKYLKLLEKSFSPDISKAYRNVDFEASTINSIIA 120
                        QLEGCQKELNVALSKYLKLLEKSFSPDISKAYRNVDFEASTINSIIA
Sbjct: 61  ELKAKLNELAPLNQLEGCQKELNVALSKYLKLLEKSFSPDISKAYRNVDFEASTINSIIA 120

Query: 121 NHFYRQGLFDLGDSFVRECGESDGAHLKLQFQEMYSILEAMQVRNLQPALSWAAKNHDQL 180
           NHFYRQGLFDLGDSFVRECGESDGAHLKLQFQEMYSILEAMQVRNLQPALSWAAKNHDQL
Sbjct: 121 NHFYRQGLFDLGDSFVRECGESDGAHLKLQFQEMYSILEAMQVRNLQPALSWAAKNHDQL 180

Query: 181 LQNGSMLELKLHQLQFVEILTKGSRDEALKYARTHLVPFASLHKAEIQKLMACLLWADRL 240
           LQNGSMLELKLHQLQFVEILTKGSRDEALKYARTHLVPFASLHKAEIQKLMACLLWADRL
Sbjct: 181 LQNGSMLELKLHQLQFVEILTKGSRDEALKYARTHLVPFASLHKAEIQKLMACLLWADRL 240

Query: 241 DQSPYAEFMSSTHWEKLAEELTHQFCSLLGQSSESPLGVAVSAGFQGLPTLLKLTTVMAA 300
           DQSPYAEFMSSTHWEKLAEELTHQFCSLLGQSSESPLGVAVSAGFQGLPTLLKLTTVMAA
Sbjct: 241 DQSPYAEFMSSTHWEKLAEELTHQFCSLLGQSSESPLGVAVSAGFQGLPTLLKLTTVMAA 300

Query: 301 KKQEWQAMKQLPVPIDIGPEFQYHSVFVCPVLREQSSDENPPMLMPCGHVVSKQSIMKLS 360
           KKQEWQAMKQLPVPIDIGPEFQYHSVFVCPVLREQSSDENPPMLMPCGHVVSKQSIMKLS
Sbjct: 301 KKQEWQAMKQLPVPIDIGPEFQYHSVFVCPVLREQSSDENPPMLMPCGHVVSKQSIMKLS 360

Query: 361 KSSSRPFKCPYCPSEAVASQCKQLHF 386
           KSSSRPFKCPYCPSEAVASQCKQLHF
Sbjct: 361 KSSSRPFKCPYCPSEAVASQCKQLHF 386



>Os05g0160100 Lissencephaly type-1-like homology motif domain containing protein
          Length = 406

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 129/265 (48%), Gaps = 4/265 (1%)

Query: 107 NVDFEASTINSIIANHFYRQGLFDLGDSFVRECGESDGAHLKLQFQEMYSILEAMQVRNL 166
           + ++E   +  I+ ++  R   +D   +     G  D   + + F +   +++++Q + +
Sbjct: 128 DAEWEELRLKRILVDYMLRMSYYDTAANLAETSGIQDLVDVDV-FLDAKRVIDSLQNKEI 186

Query: 167 QPALSWAAKNHDQLLQNGSMLELKLHQLQFVEILTKGSRDEALKYARTHLVPFASLHKAE 226
            PAL+W A+N  +L ++ S LE  L   +FVE++   +   A+ YAR +L P+ + H  E
Sbjct: 187 APALAWCAENRSRLKKSKSKLEFFLRLQEFVELVKAKNFMHAIAYARKYLSPWGATHMKE 246

Query: 227 IQKLMACLLWADRLDQSPYAEFMSSTHWEKLAEELTHQFCSLLGQSSESPLGVAVSAGFQ 286
           +Q++ A L++    + +PY        W+ L ++   +FC L G + E  L + + AG  
Sbjct: 247 LQRVTATLVFRSSTNCAPYKVLFEQNQWDSLVDQFKQEFCKLYGMTLEPLLNIYMQAGLT 306

Query: 287 GLPTLLKLTTVMAAKKQ-EWQAMKQLPVPIDIGPEFQYHSVFVCPVLREQSSDENPPMLM 345
            L T          +        ++L  P+      Q+HS  VC + +E    ENPP++ 
Sbjct: 307 ALKTPFCFDGNCPKEDPLSLPGFRKLAEPLPFSK--QHHSKLVCYITKELMDTENPPLVF 364

Query: 346 PCGHVVSKQSIMKLSKSSSRPFKCP 370
           P G+V S +++ +++K +     CP
Sbjct: 365 PNGYVYSTKALDEMAKKNGGKVTCP 389



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.130    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,130,167
Number of extensions: 404192
Number of successful extensions: 1071
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1071
Number of HSP's successfully gapped: 2
Length of query: 386
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 283
Effective length of database: 11,657,759
Effective search space: 3299145797
Effective search space used: 3299145797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)