Os06g0588900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Lissencephaly type-1-like homology motif domain containing protein.
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Os06g0588900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Lissencephaly type-1-like homology motif domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.35 | 0.227 | 10.4 | 0.523 | 0.153 | 0.427 | -0.226 | 1.31 | 0.158 | 0.237 | 20.8 | 1664 | -- | -- |
| 26.25 | 0.239 | 10.4 | 0.349 | 0.174 | 0.288 | -0.132 | -- | 0.11 | 23.3 | 22 | 1759 | -- | -- |
| 23.16 | 0.224 | 10.4 | 0.568 | 0.154 | 0.389 | -- | 1.21 | 0.152 | 0.361 | 21.5 | 1686 | -- | -- |
| 25.99 | 0.237 | 10.4 | 0.261 | 0.151 | 0.291 | -- | -- | 0.0748 | 0.339 | 22 | 1740 | -- | -- |
| 24.69 | 0.231 | 10.4 | 0.56 | -- | 0.387 | -- | 1.18 | 0.151 | -- | 21.5 | 1816 | -- | -- |
| 28.75 | 0.251 | 10.4 | 0.371 | 0.155 | -- | -0.223 | -- | 0.168 | 0.169 | -- | -- | -- | -- |
| 28.97 | 0.252 | 10.4 | 0.379 | 0.155 | -- | -- | -- | 0.169 | 0.179 | -- | -- | -- | -- |
| 25.72 | 0.236 | 10.4 | 0.298 | -- | 0.321 | -- | -- | 0.062 | -- | 24.41 | 778 | -- | -- |
| 27.35 | 0.244 | 10.4 | -- | 0.155 | 0.383 | -- | -- | 0.0278 | 0.441 | 21.7 | 1785 | -- | -- |
| 30.49 | 0.258 | 10.4 | 0.384 | -- | -- | -- | -- | 0.172 | -- | -- | -- | -- | -- |
| 32.76 | 0.268 | 10.4 | -- | 0.161 | -- | -- | -- | 0.127 | 0.308 | -- | -- | -- | -- |
| 27.48 | 0.244 | 10.4 | -- | -- | 0.382 | -- | -- | -0.00423 | -- | 24.3 | 789 | -- | -- |
| 34.38 | 0.274 | 10.4 | -- | -- | -- | -- | -- | 0.129 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.46 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 2 | 22.47 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 5 | 22.60 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 20 | 8 |
| 7 | 22.79 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 9 | 22.83 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 17 | 22.96 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 4 |
| 21 | 23.01 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 22 | 23.02 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 27 | 23.07 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 10 | 17 |
| 28 | 23.08 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 32 | 23.10 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 33 | 23.10 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 34 | 23.10 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 38 | 23.12 | temperature | 20.0 | 270 | > th | dose independent | rect. | 11 | 21 |
| 48 | 23.16 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 57 | 23.19 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 19 |
| 74 | 23.26 | temperature | 25.0 | 720 | < th | dose dependent | sin | 18 | NA |
| 123 | 23.39 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 134 | 23.40 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 136 | 23.40 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 149 | 23.42 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 20 |
| 152 | 23.43 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 161 | 23.43 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 14 |
| 162 | 23.43 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 216 | 23.52 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 221 | 23.53 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 310 | 23.63 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 320 | 23.64 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 8 |
| 328 | 23.65 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 340 | 23.67 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 377 | 23.68 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 450 | 23.75 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 21 | 4 |
| 459 | 23.76 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 2 | 7 |
| 477 | 23.77 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 15 |
| 487 | 23.78 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 495 | 23.79 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 517 | 23.80 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 10 |
| 557 | 23.83 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 3 |
| 723 | 23.90 | temperature | 20.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 793 | 23.93 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 802 | 23.94 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 818 | 23.95 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 19 |
| 820 | 23.95 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 839 | 23.96 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 13 | 17 |
| 860 | 23.97 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 863 | 23.97 | humidity | 80.0 | 270 | < th | dose independent | rect. | 21 | 15 |
| 924 | 24.00 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 22 | 7 |
| 943 | 24.00 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 944 | 24.01 | temperature | 20.0 | 1440 | > th | dose independent | sin | 15 | NA |
| 947 | 24.01 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 3 | 2 |
| 953 | 24.01 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 12 |