Os05g0160100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Lissencephaly type-1-like homology motif domain containing protein.
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Os05g0160100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Lissencephaly type-1-like homology motif domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.19 | 0.258 | 9.99 | -0.0317 | 0.53 | 0.44 | -0.0497 | -0.286 | 0.151 | 22.2 | 15.33 | 68 | -- | -- |
| 30.51 | 0.257 | 9.99 | -0.0208 | 0.534 | 0.434 | -0.121 | -- | 0.151 | 22.1 | 15.31 | 67 | -- | -- |
| 30.19 | 0.256 | 9.99 | -0.0296 | 0.532 | 0.44 | -- | -0.312 | 0.152 | 22.2 | 15.33 | 67 | -- | -- |
| 30.7 | 0.258 | 9.99 | -0.0211 | 0.533 | 0.436 | -- | -- | 0.148 | 22.2 | 15.33 | 67 | -- | -- |
| 38.33 | 0.288 | 9.98 | 0.0381 | -- | 0.709 | -- | -0.319 | 0.185 | -- | 11.83 | 48 | -- | -- |
| 36.16 | 0.282 | 10 | -0.0653 | 0.867 | -- | -0.177 | -- | 0.119 | 23.2 | -- | -- | -- | -- |
| 36.3 | 0.282 | 10 | -0.0581 | 0.868 | -- | -- | -- | 0.12 | 23.2 | -- | -- | -- | -- |
| 37.75 | 0.286 | 10 | -0.104 | -- | 0.684 | -- | -- | 0.119 | -- | 9.3 | 45 | -- | -- |
| 30.71 | 0.258 | 9.99 | -- | 0.534 | 0.433 | -- | -- | 0.151 | 22.2 | 15.32 | 67 | -- | -- |
| 83.43 | 0.427 | 9.98 | -0.0367 | -- | -- | -- | -- | 0.128 | -- | -- | -- | -- | -- |
| 36.39 | 0.282 | 10 | -- | 0.868 | -- | -- | -- | 0.126 | 23.2 | -- | -- | -- | -- |
| 38.03 | 0.287 | 9.99 | -- | -- | 0.698 | -- | -- | 0.137 | -- | 9.28 | 47 | -- | -- |
| 83.47 | 0.426 | 9.98 | -- | -- | -- | -- | -- | 0.132 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.51 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 6 | 14 |
| 4 | 27.76 | radiation | 10.0 | 30 | < th | dose independent | rect. | 6 | 14 |
| 11 | 28.27 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 24 | 9 |
| 22 | 28.64 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 16 |
| 62 | 29.16 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 63 | 29.17 | radiation | 20.0 | 90 | < th | dose independent | rect. | 13 | 20 |
| 64 | 29.17 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 73 | 29.21 | radiation | 20.0 | 90 | < th | dose independent | rect. | 2 | 18 |
| 81 | 29.25 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 22 | 9 |
| 88 | 29.29 | radiation | 20.0 | 90 | < th | dose independent | rect. | 15 | 18 |
| 89 | 29.31 | radiation | 20.0 | 90 | < th | dose independent | rect. | 17 | 16 |
| 91 | 29.31 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 96 | 29.37 | humidity | 80.0 | 10 | < th | dose independent | rect. | 9 | 8 |
| 103 | 29.39 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 104 | 29.40 | radiation | 20.0 | 90 | < th | dose independent | rect. | 13 | 22 |
| 110 | 29.41 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 13 |
| 118 | 29.42 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 17 |
| 134 | 29.48 | radiation | 20.0 | 90 | < th | dose dependent | sin | 0 | NA |
| 145 | 29.50 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 15 | 17 |
| 187 | 29.63 | temperature | 15.0 | 720 | > th | dose dependent | sin | 9 | NA |
| 204 | 29.66 | temperature | 25.0 | 720 | < th | dose dependent | sin | 9 | NA |
| 211 | 29.67 | temperature | 15.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 217 | 29.68 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 9 | 8 |
| 226 | 29.72 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 17 |
| 251 | 29.77 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 23 | 6 |
| 284 | 29.82 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 6 |
| 295 | 29.84 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 17 | 16 |
| 310 | 29.88 | humidity | 80.0 | 10 | < th | dose independent | rect. | 9 | 6 |
| 417 | 30.05 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 418 | 30.05 | temperature | 15.0 | 270 | > th | dose independent | rect. | 20 | 17 |
| 421 | 30.05 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 451 | 30.09 | radiation | 10.0 | 30 | < th | dose independent | sin | 22 | NA |
| 463 | 30.10 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 17 | 16 |
| 504 | 30.15 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 7 |
| 520 | 30.17 | wind | 1.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 522 | 30.17 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 13 | 7 |
| 543 | 30.20 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 19 |
| 565 | 30.22 | temperature | 20.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 568 | 30.22 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 569 | 30.22 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 570 | 30.22 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 571 | 30.22 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 577 | 30.22 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 578 | 30.22 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 582 | 30.22 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 593 | 30.23 | wind | 7.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 606 | 30.24 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 614 | 30.25 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 8 |
| 619 | 30.25 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 621 | 30.25 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 6 | 14 |
| 624 | 30.25 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 635 | 30.27 | humidity | 80.0 | 10 | < th | dose independent | rect. | 6 | 11 |
| 644 | 30.28 | radiation | 10.0 | 30 | > th | dose independent | rect. | 9 | 8 |
| 653 | 30.29 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 8 |
| 704 | 30.33 | radiation | 20.0 | 90 | < th | dose independent | rect. | 23 | 23 |
| 706 | 30.33 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 715 | 30.34 | radiation | 20.0 | 90 | < th | dose independent | rect. | 13 | 7 |
| 716 | 30.34 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 8 |
| 721 | 30.34 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 15 | 4 |
| 724 | 30.34 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 732 | 30.35 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 746 | 30.36 | humidity | 80.0 | 10 | < th | dose independent | rect. | 2 | 15 |
| 747 | 30.36 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 748 | 30.36 | humidity | 80.0 | 10 | < th | dose independent | rect. | 24 | 17 |
| 803 | 30.40 | radiation | 10.0 | 90 | > th | dose independent | sin | 0 | NA |
| 810 | 30.40 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 2 | 7 |
| 856 | 30.42 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 858 | 30.43 | radiation | 40.0 | 270 | < th | dose independent | rect. | 12 | 8 |
| 895 | 30.46 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 896 | 30.46 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 898 | 30.46 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 16 |
| 899 | 30.46 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 16 |
| 909 | 30.46 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 918 | 30.47 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 6 |
| 920 | 30.47 | temperature | 25.0 | 720 | < th | dose independent | rect. | 20 | 16 |
| 936 | 30.48 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 942 | 30.49 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 945 | 30.49 | humidity | 70.0 | 30 | > th | dose independent | rect. | 2 | 18 |
| 959 | 30.50 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 961 | 30.50 | temperature | 25.0 | 270 | < th | dose independent | rect. | 7 | 19 |
| 995 | 30.52 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 21 |
| 997 | 30.52 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 2 | 1 |