BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0160100 Os05g0160100|AK073554
         (406 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0160100  Lissencephaly type-1-like homology motif domai...   721   0.0  
Os06g0588900  Lissencephaly type-1-like homology motif domai...   109   4e-24

>Os05g0160100 Lissencephaly type-1-like homology motif domain containing protein
          Length = 406

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/406 (87%), Positives = 354/406 (87%)

Query: 1   MEMAIDTXXXXXXXXXXXXGRQTRAAESVRLEHQLLRVPLEALKSTVRTNHRLAEKEIXX 60
           MEMAIDT            GRQTRAAESVRLEHQLLRVPLEALKSTVRTNHRLAEKEI  
Sbjct: 1   MEMAIDTPSPSPSASSAAAGRQTRAAESVRLEHQLLRVPLEALKSTVRTNHRLAEKEIAA 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXVDHLTSLVSRLHGLKRKMEEGARAEELQVQRCRARLNRL 120
                                VDHLTSLVSRLHGLKRKMEEGARAEELQVQRCRARLNRL
Sbjct: 61  VLSSAAAAPGGGGGGSGDAAAVDHLTSLVSRLHGLKRKMEEGARAEELQVQRCRARLNRL 120

Query: 121 ASASSGDDAEWEELRLKRILVDYMLRMSYYDTAANLAETSGIQDLVDVDVFLDAKRVIDS 180
           ASASSGDDAEWEELRLKRILVDYMLRMSYYDTAANLAETSGIQDLVDVDVFLDAKRVIDS
Sbjct: 121 ASASSGDDAEWEELRLKRILVDYMLRMSYYDTAANLAETSGIQDLVDVDVFLDAKRVIDS 180

Query: 181 LQNKEIAPALAWCAENXXXXXXXXXXXXXXXXXQEFVELVKAKNFMHAIAYARKYLSPWG 240
           LQNKEIAPALAWCAEN                 QEFVELVKAKNFMHAIAYARKYLSPWG
Sbjct: 181 LQNKEIAPALAWCAENRSRLKKSKSKLEFFLRLQEFVELVKAKNFMHAIAYARKYLSPWG 240

Query: 241 ATHMKELQRVTATLVFRSSTNCAPYKVLFEQNQWDSLVDQFKQEFCKLYGMTLEPLLNIY 300
           ATHMKELQRVTATLVFRSSTNCAPYKVLFEQNQWDSLVDQFKQEFCKLYGMTLEPLLNIY
Sbjct: 241 ATHMKELQRVTATLVFRSSTNCAPYKVLFEQNQWDSLVDQFKQEFCKLYGMTLEPLLNIY 300

Query: 301 MQAGLTALKTPFCFDGNCPKEDPLSLPGFRKLAEPLPFSKQHHSKLVCYITKELMDTENP 360
           MQAGLTALKTPFCFDGNCPKEDPLSLPGFRKLAEPLPFSKQHHSKLVCYITKELMDTENP
Sbjct: 301 MQAGLTALKTPFCFDGNCPKEDPLSLPGFRKLAEPLPFSKQHHSKLVCYITKELMDTENP 360

Query: 361 PLVFPNGYVYSTKALDEMAKKNGGKVTCPRTGDICNYTDLVKAYIS 406
           PLVFPNGYVYSTKALDEMAKKNGGKVTCPRTGDICNYTDLVKAYIS
Sbjct: 361 PLVFPNGYVYSTKALDEMAKKNGGKVTCPRTGDICNYTDLVKAYIS 406



>Os06g0588900 Lissencephaly type-1-like homology motif domain containing protein
          Length = 386

 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 121/265 (45%), Gaps = 4/265 (1%)

Query: 128 DAEWEELRLKRILVDYMLRMSYYDTAANLAETSGIQDLVDVDV-FLDAKRVIDSLQNKEI 186
           + ++E   +  I+ ++  R   +D   +     G  D   + + F +   +++++Q + +
Sbjct: 107 NVDFEASTINSIIANHFYRQGLFDLGDSFVRECGESDGAHLKLQFQEMYSILEAMQVRNL 166

Query: 187 APALAWCAENXXXXXXXXXXXXXXXXXQEFVELVKAKNFMHAIAYARKYLSPWGATHMKE 246
            PAL+W A+N                  +FVE++   +   A+ YAR +L P+ + H  E
Sbjct: 167 QPALSWAAKNHDQLLQNGSMLELKLHQLQFVEILTKGSRDEALKYARTHLVPFASLHKAE 226

Query: 247 LQRVTATLVFRSSTNCAPYKVLFEQNQWDSLVDQFKQEFCKLYGMTLEPLLNIYMQAGLT 306
           +Q++ A L++    + +PY        W+ L ++   +FC L G + E  L + + AG  
Sbjct: 227 IQKLMACLLWADRLDQSPYAEFMSSTHWEKLAEELTHQFCSLLGQSSESPLGVAVSAGFQ 286

Query: 307 ALKTPFCFDGNCPKEDPLSLPGFRKLAEPLPFSK--QHHSKLVCYITKELMDTENPPLVF 364
            L T          +        ++L  P+      Q+HS  VC + +E    ENPP++ 
Sbjct: 287 GLPTLLKLTTVMAAKKQ-EWQAMKQLPVPIDIGPEFQYHSVFVCPVLREQSSDENPPMLM 345

Query: 365 PNGYVYSTKALDEMAKKNGGKVTCP 389
           P G+V S +++ +++K +     CP
Sbjct: 346 PCGHVVSKQSIMKLSKSSSRPFKCP 370



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,093,524
Number of extensions: 408492
Number of successful extensions: 994
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 990
Number of HSP's successfully gapped: 2
Length of query: 406
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 303
Effective length of database: 11,657,759
Effective search space: 3532300977
Effective search space used: 3532300977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)