BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0160100 Os05g0160100|AK073554
(406 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G55070.1 | chr3:20408377-20410887 FORWARD LENGTH=419 496 e-140
AT4G37880.1 | chr4:17810183-17811349 FORWARD LENGTH=389 106 3e-23
AT2G22690.1 | chr2:9649820-9650965 REVERSE LENGTH=382 90 2e-18
AT5G09630.1 | chr5:2986016-2987176 REVERSE LENGTH=387 78 8e-15
>AT3G55070.1 | chr3:20408377-20410887 FORWARD LENGTH=419
Length = 418
Score = 496 bits (1276), Expect = e-140, Method: Compositional matrix adjust.
Identities = 238/384 (61%), Positives = 282/384 (73%), Gaps = 6/384 (1%)
Query: 26 AESVRLEHQLLRVPLEALKSTVRTNHRLAEKEIXXXXXXXXXXXXXXXXXXXXXXXVDHL 85
ES++LEHQLLRVP E K T+RTNHR EKE+ V L
Sbjct: 38 TESLKLEHQLLRVPFEHYKKTIRTNHRSFEKEVSTIVNGVGELADSDWSKDDT---VSRL 94
Query: 86 TSLVSRLHGLKRKMEEGARAEELQVQRCRARLNRLASASSGDDAEWEELRLKRILVDYML 145
T LV+RL GLKRK+EEG+ E LQ QRCRAR++ L S + EW +LKRILVDYML
Sbjct: 95 TCLVTRLQGLKRKLEEGSNVENLQAQRCRARIDHLDSVDVENITEWNNTKLKRILVDYML 154
Query: 146 RMSYYDTAANLAETSGIQDLVDVDVFLDAKRVIDSLQNKEIAPALAWCAENXXXXXXXXX 205
RMSY++TA L+E+S I DLVD+D+F +AK+VID+L+N+E+A AL WCA+N
Sbjct: 155 RMSYFETATKLSESSNIMDLVDIDIFREAKKVIDALKNREVASALTWCADNKTRLKKSKS 214
Query: 206 XXXXXXXXQEFVELVK---AKNFMHAIAYARKYLSPWGATHMKELQRVTATLVFRSSTNC 262
QEF+ELV+ A+++ AI YARK+L+ WG THMKELQ V ATL F+S+T C
Sbjct: 215 KFEFQLRLQEFIELVRVDTAESYKKAIQYARKHLASWGTTHMKELQHVLATLAFKSTTEC 274
Query: 263 APYKVLFEQNQWDSLVDQFKQEFCKLYGMTLEPLLNIYMQAGLTALKTPFCFDGNCPKED 322
+ YKVLFE QWD LVDQFKQEFCKLYGMT+EPLLNIY+QAGL+ALKTP+ + C KED
Sbjct: 275 SKYKVLFELRQWDVLVDQFKQEFCKLYGMTMEPLLNIYLQAGLSALKTPYGLEEGCTKED 334
Query: 323 PLSLPGFRKLAEPLPFSKQHHSKLVCYITKELMDTENPPLVFPNGYVYSTKALDEMAKKN 382
PLS FRKLA PLPFSKQHHSKLVCYI+KELMDTENPP V PNGYVYSTKAL EMA+KN
Sbjct: 335 PLSQENFRKLALPLPFSKQHHSKLVCYISKELMDTENPPQVLPNGYVYSTKALKEMAEKN 394
Query: 383 GGKVTCPRTGDICNYTDLVKAYIS 406
GGK+TCPRTG +CNYT+LVKAYIS
Sbjct: 395 GGKITCPRTGLVCNYTELVKAYIS 418
>AT4G37880.1 | chr4:17810183-17811349 FORWARD LENGTH=389
Length = 388
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 133/290 (45%), Gaps = 16/290 (5%)
Query: 116 RLNRLASASSGDDAEWEELRLKRILVDYMLRMSYYDTAANLAETSGIQDLVDVDVFLDAK 175
+LN S + + E++ + +I+ ++ R +D +G + F++
Sbjct: 96 QLNPDISKAYRHNVEFDTHIVNQIIANFFYRQGMFDIGDCFVAETGESECSTRQSFVEMY 155
Query: 176 RVIDSLQNKEIAPALAWCAENXXXXXXXXXXXXXXXXXQEFVELVKAKNFMHAIAYARKY 235
R++++++ +++ PAL W N F+E+ + KN AI YARK+
Sbjct: 156 RILEAMKRRDLEPALNWAVSNSDKLKEARSDLEMKLHSLHFLEIARGKNSKEAIDYARKH 215
Query: 236 LSPWGATHMKELQRVTATLVFRSSTNCAPYKVLFEQNQWDSLVDQFKQEFCKLYGMTLEP 295
++ + + + E+Q++ +L++ + +PY W++ V + +++C L G + E
Sbjct: 216 IATFADSCLPEIQKLMCSLLWNRKLDKSPYSEFLSPALWNNAVKELTRQYCNLLGESSES 275
Query: 296 LLNIYMQAGLTALKTPFCFDGNCPKEDPL------SLPGFRKLAEPLPFSKQHHSKLVCY 349
L+I + AG AL + L LP +L+E F HS VC
Sbjct: 276 PLSITVTAGTQALPVLLKYMNVVMANKKLDWQTMEQLPVDAQLSEEFQF----HSVFVCP 331
Query: 350 ITKELMDTENPPLVFPNGYVYSTKALDEMAKKNGGKVT-----CPRTGDI 394
++KE +NPP++ G+V + +++M+ KNG K + CP DI
Sbjct: 332 VSKEQSSDDNPPMMMSCGHVLCKQTINKMS-KNGSKSSFKCPYCPTDVDI 380
>AT2G22690.1 | chr2:9649820-9650965 REVERSE LENGTH=382
Length = 381
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 118/260 (45%), Gaps = 7/260 (2%)
Query: 136 LKRILVDYMLRMSYYDTA-ANLAETSGIQDLVDV-DVFLDAKRVIDSLQNKEIAPALAWC 193
+ +IL + R YD ++ET ++ V F++ ++++++ +++ PAL W
Sbjct: 107 VHQILAQFFYRQGMYDVGDCFISETGEVKPESSVTKAFMEMNMILEAMKERDLGPALKWV 166
Query: 194 AENXXXXXXXXXXXXXXXXXQEFVELVKAKNFMHAIAYARKYLSPWGATH--MKELQRVT 251
A N F+E+ K K AI YARK+ + + A E+Q++
Sbjct: 167 ASNSDKLKEAKSDLELKLHSLHFLEIAKDKTSEEAINYARKHFATYSADSCCFPEIQKLM 226
Query: 252 ATLVFRSSTNCAPYKVLFEQNQWDSLVDQFKQEFCKLYGMTLEPLLNIYMQAGLTALKTP 311
+L++ + N +PY W + + +++C L G + E L++ + AG L T
Sbjct: 227 CSLLWIRNLNKSPYSEFLSPVLWTNAAKELTRQYCILLGESPESPLSVTVAAGSQVLPT- 285
Query: 312 FCFDGNCPKEDPLSLPGFRKLAEPLPFSKQH--HSKLVCYITKELMDTENPPLVFPNGYV 369
F N E +L P+ S+++ +S VC ++KE +NPP+ G+V
Sbjct: 286 FLKYLNVLPEKRKEWQTMEQLLVPVELSEEYRFYSVFVCPVSKEHSSEDNPPMRLACGHV 345
Query: 370 YSTKALDEMAKKNGGKVTCP 389
++++ M++ CP
Sbjct: 346 LCKQSINRMSRNGSRSFKCP 365
>AT5G09630.1 | chr5:2986016-2987176 REVERSE LENGTH=387
Length = 386
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 117/260 (45%), Gaps = 10/260 (3%)
Query: 136 LKRILVDYMLRMSYYDTAANLAETSGIQDLVDV-DVFLDAKRVIDSLQNKEIAPALAWCA 194
+ +IL+ + R +D L + +G ++ +V FL+ +++DSL+ + I PA+ W
Sbjct: 115 VNKILIHHCYREGLFDVGDCLVKEAGREEETEVRSQFLEFHQIVDSLKLRNIEPAMRWIF 174
Query: 195 ENXXXXXXXXXXXXXXXXXQEFVELVKAKNFMHAIAYARKYLSPWGATHMKELQRVTATL 254
N ++ ++++ A+ YAR + + + H KE+Q++ L
Sbjct: 175 ANRGKLKQKSSKLEFKLLSLKYCDILREGKSDDALEYARTHFTQY-PLHFKEIQKLITCL 233
Query: 255 VFRSSTNCAPYKVLFEQNQWDSLVDQFKQEFCKLYGMTLEPLLNIYMQAGLTALKT--PF 312
++ + +PY + + WD + + E+ L + L + + AG +L +
Sbjct: 234 LWIGNFEKSPYAEIVSPSCWDKVTKELIMEYHHLLDQPINSPLKVALSAGYESLPSLLKL 293
Query: 313 CFDGNCPKEDPLSLPGFRKLAEPLPFSKQH--HSKLVCYITKELMDTENPPLVFPNGYVY 370
K++ ++L PL ++ HS VC ++++ ENPP+ P G+V
Sbjct: 294 VHLMALTKQE---WQAMKQLPVPLELGNEYKFHSAFVCPVSRDQSSEENPPMQLPCGHVI 350
Query: 371 STKALDEMAKKNGGKV-TCP 389
S +++ ++K + CP
Sbjct: 351 SKQSMMRLSKNCAFRTFKCP 370
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,260,992
Number of extensions: 278040
Number of successful extensions: 672
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 665
Number of HSP's successfully gapped: 4
Length of query: 406
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 305
Effective length of database: 8,337,553
Effective search space: 2542953665
Effective search space used: 2542953665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)