BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0563300 Os06g0563300|AK111494
(598 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0563300 Similar to Ser/Thr specific protein phosphatas... 1036 0.0
Os02g0224200 Similar to Ser/Thr specific protein phosphatas... 864 0.0
>Os06g0563300 Similar to Ser/Thr specific protein phosphatase 2A B regulatory
subunit alpha isoform
Length = 598
Score = 1036 bits (2678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/598 (85%), Positives = 509/598 (85%)
Query: 1 QTHTGLDLPPPPHTSXXXXXXXXXXXXXXXXXXXXXXXXIAXXXXXXXXXXXXXXXXXXX 60
QTHTGLDLPPPPHTS IA
Sbjct: 1 QTHTGLDLPPPPHTSPRLDLPLLLRRRRQRLLLRLLPQRIAPPHPSRFLPPPPPPLPPPP 60
Query: 61 XXXRCDAPAARSRDAAMMNPDGGDGDRLEXXXXXXXXXXXXHPTMEWRFAQVFGERAAGE 120
RCDAPAARSRDAAMMNPDGGDGDRLE HPTMEWRFAQVFGERAAGE
Sbjct: 61 IPPRCDAPAARSRDAAMMNPDGGDGDRLEAAGAGSSSAQQGHPTMEWRFAQVFGERAAGE 120
Query: 121 DVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDARDNASRREMERQDAPITRHPEFR 180
DVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDARDNASRREMERQDAPITRHPEFR
Sbjct: 121 DVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDARDNASRREMERQDAPITRHPEFR 180
Query: 181 YKSEFQSHEPEFDYLKSLEIEEKINKIRWCQTANNSLSLLSTNDKTIKYWXXXXXXXXXX 240
YKSEFQSHEPEFDYLKSLEIEEKINKIRWCQTANNSLSLLSTNDKTIKYW
Sbjct: 181 YKSEFQSHEPEFDYLKSLEIEEKINKIRWCQTANNSLSLLSTNDKTIKYWKVQEKKVKQV 240
Query: 241 XXMNLDXXXXXXXXXXXXXXXXXXXLLPNGGCSDKSSFLNSDILFPPGGYPSLRLPVVVA 300
MNLD LLPNGGCSDKSSFLNSDILFPPGGYPSLRLPVVVA
Sbjct: 241 SVMNLDSRSVGTGTSSSASTSSSRGLLPNGGCSDKSSFLNSDILFPPGGYPSLRLPVVVA 300
Query: 301 SQDVNLVARCRRVYAHAHDYHINSISTNSDGETYISADDLRINLWNLEINNQSFNIVDVK 360
SQDVNLVARCRRVYAHAHDYHINSISTNSDGETYISADDLRINLWNLEINNQSFNIVDVK
Sbjct: 301 SQDVNLVARCRRVYAHAHDYHINSISTNSDGETYISADDLRINLWNLEINNQSFNIVDVK 360
Query: 361 PPNMEDLTEVITCAEFHPTHCNTLAYSSSKGSIRLIDLRQSALCDNHSKIFEEHEAPGSR 420
PPNMEDLTEVITCAEFHPTHCNTLAYSSSKGSIRLIDLRQSALCDNHSKIFEEHEAPGSR
Sbjct: 361 PPNMEDLTEVITCAEFHPTHCNTLAYSSSKGSIRLIDLRQSALCDNHSKIFEEHEAPGSR 420
Query: 421 SFFTEIIASISDIKFSRDGRYILSRDYMTLKLWDLNMDSGPVSTFQVHEHLRPKLCDLYE 480
SFFTEIIASISDIKFSRDGRYILSRDYMTLKLWDLNMDSGPVSTFQVHEHLRPKLCDLYE
Sbjct: 421 SFFTEIIASISDIKFSRDGRYILSRDYMTLKLWDLNMDSGPVSTFQVHEHLRPKLCDLYE 480
Query: 481 NDSIFDKFECCLSGDGLHVATGSYGNLFRVFGCTPGSTEATTLEASRNPMRRQIVNPTRP 540
NDSIFDKFECCLSGDGLHVATGSYGNLFRVFGCTPGSTEATTLEASRNPMRRQIVNPTRP
Sbjct: 481 NDSIFDKFECCLSGDGLHVATGSYGNLFRVFGCTPGSTEATTLEASRNPMRRQIVNPTRP 540
Query: 541 TRTLTSLARGVRRGGENQGVDANGNSFDFSTKLLHLAWHPTENSIACAAANSLYMYYA 598
TRTLTSLARGVRRGGENQGVDANGNSFDFSTKLLHLAWHPTENSIACAAANSLYMYYA
Sbjct: 541 TRTLTSLARGVRRGGENQGVDANGNSFDFSTKLLHLAWHPTENSIACAAANSLYMYYA 598
>Os02g0224200 Similar to Ser/Thr specific protein phosphatase 2A B regulatory
subunit beta isoform
Length = 525
Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/495 (83%), Positives = 440/495 (88%), Gaps = 2/495 (0%)
Query: 106 EWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDARDNASRRE 165
EWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTD+RD+ASR E
Sbjct: 31 EWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSRDSASRSE 90
Query: 166 MERQDAPITRHPEFRYKSEFQSHEPEFDYLKSLEIEEKINKIRWCQTANNSLSLLSTNDK 225
+ERQD PI RHPEFRYK+EFQSHEPEFDYLKSLEIEEKINKI+WCQTANN+L LLSTNDK
Sbjct: 91 LERQDYPIARHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANNALFLLSTNDK 150
Query: 226 TIKYWXXXXXXXXXXXXMNLDXXXXXXXXXXXXXXXXXX-XLLPNGGCSDK-SSFLNSDI 283
TIKYW MNL+ +LPNGGCS+K +F N+D+
Sbjct: 151 TIKYWKVQERKVKRISVMNLNTSQSSGNGTTSSSSSSSSRAILPNGGCSEKLYNFPNNDL 210
Query: 284 LFPPGGYPSLRLPVVVASQDVNLVARCRRVYAHAHDYHINSISTNSDGETYISADDLRIN 343
LFPPGG SLRLPVVV QD+NLV RCRRVY+HAHDYHINSIS NSDGETYISADDLRIN
Sbjct: 211 LFPPGGCTSLRLPVVVTGQDLNLVPRCRRVYSHAHDYHINSISNNSDGETYISADDLRIN 270
Query: 344 LWNLEINNQSFNIVDVKPPNMEDLTEVITCAEFHPTHCNTLAYSSSKGSIRLIDLRQSAL 403
LWNLEI+NQSFNIVDVKP NMEDLTEVITCAEFHPTHCNTLAYSSSKGSIRLIDLRQSAL
Sbjct: 271 LWNLEISNQSFNIVDVKPANMEDLTEVITCAEFHPTHCNTLAYSSSKGSIRLIDLRQSAL 330
Query: 404 CDNHSKIFEEHEAPGSRSFFTEIIASISDIKFSRDGRYILSRDYMTLKLWDLNMDSGPVS 463
CDNH+K+FEEHEAPGSRSFFTEIIAS+SDIKF+RDGR+ILSRDYMTLKLWD+NMDSGPV+
Sbjct: 331 CDNHAKLFEEHEAPGSRSFFTEIIASVSDIKFARDGRHILSRDYMTLKLWDINMDSGPVA 390
Query: 464 TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGLHVATGSYGNLFRVFGCTPGSTEATTL 523
TFQVHE+LRPKLCDLYENDSIFDKFECCLSGDGL VATGSY NLFRVFGCTPGS EATTL
Sbjct: 391 TFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCTPGSAEATTL 450
Query: 524 EASRNPMRRQIVNPTRPTRTLTSLARGVRRGGENQGVDANGNSFDFSTKLLHLAWHPTEN 583
EASRNPMRRQ+ NPTRP RTLTSL R VRRGGEN GVDANGNS+D STKLLHLAWHPTEN
Sbjct: 451 EASRNPMRRQVANPTRPARTLTSLTRAVRRGGENPGVDANGNSYDLSTKLLHLAWHPTEN 510
Query: 584 SIACAAANSLYMYYA 598
SIACAAANSLYMYYA
Sbjct: 511 SIACAAANSLYMYYA 525
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,243,363
Number of extensions: 758741
Number of successful extensions: 1791
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1783
Number of HSP's successfully gapped: 2
Length of query: 598
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 491
Effective length of database: 11,448,903
Effective search space: 5621411373
Effective search space used: 5621411373
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)