Os02g0224200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ser/Thr specific protein phosphatase 2A B regulatory subunit beta isoform.
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Os02g0224200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ser/Thr specific protein phosphatase 2A B regulatory subunit beta isoform.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.53 | 0.233 | 11.1 | 0.59 | 0.561 | 0.48 | -0.209 | 0.458 | 0.168 | 0.632 | 24.8 | 3541 | -- | -- |
| 24.73 | 0.232 | 11.1 | 0.692 | 0.555 | 0.478 | -0.229 | -- | 0.198 | 0.665 | 24.8 | 3540 | -- | -- |
| 24.72 | 0.232 | 11.1 | 0.587 | 0.56 | 0.478 | -- | 0.498 | 0.166 | 0.649 | 24.75 | 3529 | -- | -- |
| 24.92 | 0.233 | 11.1 | 0.726 | 0.559 | 0.502 | -- | -- | 0.209 | 0.651 | 24.73 | 3519 | -- | -- |
| 37.2 | 0.286 | 11.1 | 0.597 | -- | 0.332 | -- | 0.189 | 0.235 | -- | 24.75 | 3529 | -- | -- |
| 30.99 | 0.261 | 11.1 | 0.53 | 0.52 | -- | -0.228 | -- | 0.0736 | 0.854 | -- | -- | -- | -- |
| 31.21 | 0.262 | 11.1 | 0.538 | 0.52 | -- | -- | -- | 0.0747 | 0.884 | -- | -- | -- | -- |
| 37.39 | 0.286 | 11 | 0.649 | -- | 0.339 | -- | -- | 0.253 | -- | 24.75 | 3529 | -- | -- |
| 37.24 | 0.284 | 11.1 | -- | 0.615 | 0.289 | -- | -- | 0.0634 | 0.919 | 26.3 | 4031 | -- | -- |
| 48.1 | 0.324 | 11.1 | 0.558 | -- | -- | -- | -- | 0.0844 | -- | -- | -- | -- | -- |
| 38.85 | 0.292 | 11.1 | -- | 0.529 | -- | -- | -- | 0.0147 | 0.929 | -- | -- | -- | -- |
| 46.08 | 0.317 | 11.1 | -- | -- | 0.338 | -- | -- | 0.0713 | -- | 27.37 | 6105 | -- | -- |
| 56.3 | 0.35 | 11.1 | -- | -- | -- | -- | -- | 0.0225 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.44 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 18 | 19 |
| 3 | 21.60 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 20 |
| 4 | 21.67 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 7 | 21.78 | temperature | 25.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 83 | 23.40 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 19 |
| 93 | 23.49 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 8 | 16 |
| 98 | 23.51 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 105 | 23.54 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 111 | 23.57 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 134 | 23.63 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 144 | 23.68 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 157 | 23.73 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 173 | 23.74 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 179 | 23.75 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 185 | 23.77 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 202 | 23.81 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 281 | 23.96 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 359 | 24.06 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 360 | 24.06 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 361 | 24.06 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 378 | 24.08 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 414 | 24.12 | temperature | 30.0 | 270 | < th | dose dependent | sin | 4 | NA |
| 424 | 24.13 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 446 | 24.15 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 8 |
| 466 | 24.16 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 603 | 24.26 | temperature | 20.0 | 4320 | > th | dose dependent | sin | 11 | NA |
| 620 | 24.27 | temperature | 10.0 | 90 | > th | dose dependent | sin | 1 | NA |
| 623 | 24.27 | temperature | 30.0 | 4320 | < th | dose dependent | sin | 11 | NA |
| 661 | 24.29 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 16 | 12 |
| 694 | 24.31 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 761 | 24.35 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 769 | 24.35 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 20 | 7 |
| 819 | 24.38 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 10 |
| 829 | 24.39 | temperature | 25.0 | 4320 | < th | dose independent | sin | 13 | NA |
| 835 | 24.39 | temperature | 25.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 894 | 24.42 | temperature | 10.0 | 10 | > th | dose dependent | sin | 0 | NA |
| 944 | 24.45 | temperature | 25.0 | 4320 | > th | dose independent | sin | 13 | NA |
| 951 | 24.45 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 3 | 11 |